Ss1.1-rnco1927b_e17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGCACAGCGCAGCCGAGCCGAGCGCAGCGCCGGTGAGCATGGGGAGCCCCGCACTCCGG CCCGCGCTGCTGCTGCTGCCGCCGCTGTTGCTGCTGCTGAGGGTCCCGCCGAGCCGCGGC TTCCCAGGATCTGGAGACTCACCGCTAGAAGACGATGAAGTCGGGTATTCATACGCTAGA TATAAAGACACCCCGTGGTGCTCCCCCATCAAGGTGAAGTTCGGGGATGTATACTGCAGG GCCCCTCAAGGAGGCTACTACAAAACAGCCCTGGGAACCAGGTGTGACATTCGCTGCCGG AAGGGCTACGAGCTGCACGGCTCTTCCCAGCTCATCTGCCAGTCAAACAAACGGTGGTCG GACAAGGTCATCTGCAAGCAAAAACGATGTCCTACCCTTGCCATGCCAGCAAATGGAGGG TTTAAGTGCGTCGACGGAGCCTACTTTAACTCCCGGTGTGAGTACTACTGCTCGCCAGGA TACACATTGAAAGGGGAGCGGACAGTCACGTGTATGGACAACAAAGCCTGGAGCGGCCGG CCAGCCTCCTGTGTCGATATAGAACCTCCTAGAATCAAGTGCCCGAGCGTGAAGGAACGC ATGGCTGAACCCAATAAGTTGACAGTCCGGGTGTCCTGGGAGACCCCGGAAGGAAGAGAC ACAGCAGATGGCATTCTGACTGATGTTATTCTAAAAGGCCTACCCCCAGGCTCACATTTT CCAGAAGGAGACCACAAGATCCAGTACACGGTCTAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGCACAGCGCAGCCGAGCCGAGCGCAGCGCCGGTGAGCATGGGGAGCCCCGCACTCCGG CCCGCGCTGCTGCTGCTGCCGCCGCTGTTGCTGCTGCTGAGGGTCCCGCCGAGCCGCGGC TTCCCAGGATCTGGAGACTCACCGCTAGAAGACGATGAAGTCGGGTATTCATACGCTAGA TATAAAGACACCCCGTGGTGCTCCCCCATCAAGGTGAAGTTCGGGGATGTATACTGCAGG GCCCCTCAAGGAGGCTACTACAAAACAGCCCTGGGAACCAGGTGTGACATTCGCTGCCGG AAGGGCTACGAGCTGCACGGCTCTTCCCAGCTCATCTGCCAGTCAAACAAACGGTGGTCG GACAAGGTCATCTGCAAGCAAAAACGATGTCCTACCCTTGCCATGCCAGCAAATGGAGGG TTTAAGTGCGTCGACGGAGCCTACTTTAACTCCCGGTGTGAGTACTACTGCTCGCCAGGA TACACATTGAAAGGGGAGCGGACAGTCACGTGTATGGACAACAAAGCCTGGAGCGGCCGG CCAGCCTCCTGTGTCGATATAGAACCTCCTAGAATCAAGTGCCCGAGCGTGAAGGAACGC ATGGCTGAACCCAATAAGTTGACAGTCCGGGTGTCCTGGGAGACCCCGGAAGGAAGAGAC ACAGCAGATGGCATTCTGACTGATGTTATTCTAAAAGGCCTACCCCCAGGCTCACATTTT CCAGAAGGAGACCACAAGATCCAGTACACGGTCTAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | More info |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
| 1-128, gnl|bosTau2|chrX (31476248-31476126) | |
| 1-128, gnl|canFam2|chrX (32967402-32967797) | |
| 1-128, gnl|dasNov1|scaffold_22306 (43780-44208) | |
| 1-128, gnl|echTel1|scaffold_315465 (109131-109528) | |
| 1-128, gnl|hg17|chrX (37835977-37836421) | |
| 1-128, gnl|Hg17|chrX (37836302-37836165) | |
| 1-128, gnl|loxAfr1|scaffold_14578 (72019-71599) | |
| 1-128, gnl|mm7|chrX (8550404-8550852) | |
| 1-128, gnl|Mm7|chrX (8550733-8550593) | |
| 1-128, gnl|monDom2|scaffold_29 (26720939-26720479) | |
| 1-128, gnl|panTro1|chrX (39030758-39031202) | |
| 1-128, gnl|rheMac2|chrX (35997762-35998202) | |
| 1-128, gnl|rn3|chrX (24887028-24886583) | |
| 186-379, gnl|bosTau2|chrX (31413179-31412986) | |
| 186-379, gnl|canFam2|chrX (32908953-32909175) | |
| 186-379, gnl|danRer3|chrNA (241462032-241462253) | |
| 186-379, gnl|echTel1|scaffold_315465 (40903-41125) | |
| 186-379, gnl|galGal2|chr1 (106698291-106698069) | |
| 186-379, gnl|hg17|chrX (37789616-37789838) | |
| 186-379, gnl|Hg17|chrX (37789823-37789630) | |
| 186-379, gnl|loxAfr1|scaffold_3904 (101346-101124) | |
| 186-379, gnl|mm7|chrX (8502509-8502728) | |
| 186-379, gnl|Mm7|chrX (8502716-8502523) | |
| 186-379, gnl|monDom2|scaffold_29 (26780762-26780540) | |
| 186-379, gnl|oryCun1|scaffold_184016 (79472-79694) | |
| 186-379, gnl|panTro1|chrX (38981357-38981579) | |
| 186-379, gnl|rheMac2|chrX (35951066-35951288) | |
| 186-379, gnl|rn3|chrX (24934101-24933882) | |
| 186-379, gnl|tetNig1|chr2 (9302263-9302052) | |
| 186-379, gnl|xenTro1|scaffold_16 (2350833-2350617) | |
| 380-564, gnl|bosTau2|chrX (31409695-31409512) | |
| 380-564, gnl|canFam2|chrX (32907473-32907701) | |
| 380-564, gnl|danRer3|chrNA (241460161-241460369) | |
| 380-564, gnl|dasNov1|scaffold_11219 (45663-45891) | |
| 380-564, gnl|echTel1|scaffold_315465 (39255-39498) | |
| 380-564, gnl|fr1|chrUn (231565860-231566075) | |
| 380-564, gnl|galGal2|chr1 (106699057-106698852) | |
| 380-564, gnl|hg17|chrX (37787321-37787551) | |
| 380-564, gnl|Hg17|chrX (37787527-37787344) | |
| 380-564, gnl|loxAfr1|scaffold_3904 (103176-102946) | |
| 380-564, gnl|mm7|chrX (8500547-8500775) | |
| 380-564, gnl|Mm7|chrX (8500751-8500568) | |
| 380-564, gnl|monDom2|scaffold_29 (26781381-26781152) | |
| 380-564, gnl|oryCun1|scaffold_184016 (76679-76911) | |
| 380-564, gnl|panTro1|chrX (38979060-38979290) | |
| 380-564, gnl|rheMac2|chrX (35948751-35948982) | |
| 380-564, gnl|rn3|chrX (24936268-24936040) | |
| 380-564, gnl|tetNig1|chr2 (9302560-9302355) | |
| 380-564, gnl|xenTro1|scaffold_16 (2351409-2351200) |
| Aligned organism(s): 49 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-128, gnl|bosTau2|chrX (31476248-31476126) | |
| 1-128, gnl|canFam2|chrX (32967402-32967797) | |
| 1-128, gnl|dasNov1|scaffold_22306 (43780-44208) | |
| 1-128, gnl|echTel1|scaffold_315465 (109131-109528) | |
| 1-128, gnl|hg17|chrX (37835977-37836421) | |
| 1-128, gnl|Hg17|chrX (37836302-37836165) | |
| 1-128, gnl|loxAfr1|scaffold_14578 (72019-71599) | |
| 1-128, gnl|mm7|chrX (8550404-8550852) | |
| 1-128, gnl|Mm7|chrX (8550733-8550593) | |
| 1-128, gnl|monDom2|scaffold_29 (26720939-26720479) | |
| 1-128, gnl|panTro1|chrX (39030758-39031202) | |
| 1-128, gnl|rheMac2|chrX (35997762-35998202) | |
| 1-128, gnl|rn3|chrX (24887028-24886583) | |
| 186-379, gnl|bosTau2|chrX (31413179-31412986) | |
| 186-379, gnl|canFam2|chrX (32908953-32909175) | |
| 186-379, gnl|danRer3|chrNA (241462032-241462253) | |
| 186-379, gnl|echTel1|scaffold_315465 (40903-41125) | |
| 186-379, gnl|galGal2|chr1 (106698291-106698069) | |
| 186-379, gnl|hg17|chrX (37789616-37789838) | |
| 186-379, gnl|Hg17|chrX (37789823-37789630) | |
| 186-379, gnl|loxAfr1|scaffold_3904 (101346-101124) | |
| 186-379, gnl|mm7|chrX (8502509-8502728) | |
| 186-379, gnl|Mm7|chrX (8502716-8502523) | |
| 186-379, gnl|monDom2|scaffold_29 (26780762-26780540) | |
| 186-379, gnl|oryCun1|scaffold_184016 (79472-79694) | |
| 186-379, gnl|panTro1|chrX (38981357-38981579) | |
| 186-379, gnl|rheMac2|chrX (35951066-35951288) | |
| 186-379, gnl|rn3|chrX (24934101-24933882) | |
| 186-379, gnl|tetNig1|chr2 (9302263-9302052) | |
| 186-379, gnl|xenTro1|scaffold_16 (2350833-2350617) | |
| 380-564, gnl|bosTau2|chrX (31409695-31409512) | |
| 380-564, gnl|canFam2|chrX (32907473-32907701) | |
| 380-564, gnl|danRer3|chrNA (241460161-241460369) | |
| 380-564, gnl|dasNov1|scaffold_11219 (45663-45891) | |
| 380-564, gnl|echTel1|scaffold_315465 (39255-39498) | |
| 380-564, gnl|fr1|chrUn (231565860-231566075) | |
| 380-564, gnl|galGal2|chr1 (106699057-106698852) | |
| 380-564, gnl|hg17|chrX (37787321-37787551) | |
| 380-564, gnl|Hg17|chrX (37787527-37787344) | |
| 380-564, gnl|loxAfr1|scaffold_3904 (103176-102946) | |
| 380-564, gnl|mm7|chrX (8500547-8500775) | |
| 380-564, gnl|Mm7|chrX (8500751-8500568) | |
| 380-564, gnl|monDom2|scaffold_29 (26781381-26781152) | |
| 380-564, gnl|oryCun1|scaffold_184016 (76679-76911) | |
| 380-564, gnl|panTro1|chrX (38979060-38979290) | |
| 380-564, gnl|rheMac2|chrX (35948751-35948982) | |
| 380-564, gnl|rn3|chrX (24936268-24936040) | |
| 380-564, gnl|tetNig1|chr2 (9302560-9302355) | |
| 380-564, gnl|xenTro1|scaffold_16 (2351409-2351200) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| jca (0.34188) | |
| nep (0.183925) | |
| nco (0.161734) | |
| eep (0.122564) | |
| cly (0.120642) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.34188) | |
| nep (0.183925) | |
| nco (0.161734) | |
| eep (0.122564) | |
| cly (0.120642) |