Non-Coding RNA Search

Ss1.1-rnco1927b_l24.5

Sequence:


               
               CTCCCACAGCCCCCAGAAGACTGCTTTGCGTTGCTCAGGGGCCGAGGGCGCGCGTGACTC
TCGTACTCAATGTGAAGGGTGTGCCTCCGCAGCCGAGGGCGTAGAAGTGGGGACGCTGCA
TCCTCGGGGCCGCTGCACTCGCTTTCCCTTCGTTGTCGCGAACTCAGTCCGCCCGGGAGG
CACCCCGTGACCGGTGCGATGAGTGCCAACGAAGACCAGGAGATGGAACTGGAGGCATTG
CGTTCCATTTATGAAGGAGATGAAAGTTTCCGGGAATTAAGTCCAGTTTCATTTCAATAT
AGGATAGGTGAAAACGGTGATCCGAAAGCCTTTTTAATAGAGATTTCCTGGACAGAAACC
TATCCCCAGACCCCTCCAATCATATCTATGAACGCCTTTTTTAACAACACCATATCATCA
GCTGTAAAGCAGAGCATCTTAGCCAAGTTACAGGAGGCAGTGGAAGTTAATCTCGGGACT
GCCATGACGTACACGTTGTTCGAATACGCCAAGGACAATAAGGAGCAGTTCATGGAGAAT
CACCATCCCATTCATTCTGCTACATCCATAAGCAATATCATCTCAACTGAAGCTCCAAAC
ACAGCCCCATCCAGTAAGAAAAAAGACAAAAAAGAACAACTTTCAAAAGCCCAGAAACGT
AAGCTAGCAGATAAAACAGATCACAAAGGAGAACTTCCTCGAGGATGGAACTGGGTTGAT
GTGGTGAAGCATTTAAGCAAAACTGGCTCTAAAGATGATGAATAGTTCTTGGAATTTGAG
ACGAGGGAAGCGCATCCCTTAAAAAATAAACGGGGTTCAGAATCTTTCATTACTCTTTTC
TGGAATTGAGGTGACTTTTTATAAAACAATTTTTTTGTATGTTTCTTATGTAAAAAGAAA
TGTTTTAAGCTGAACGTTCATGAAGAGATCTGGTTGTGTTAAATTATTTTCACAAACTTG
CCTTAATAAAAGGTGAACATTACTACTGTTTAGTATGCTCTGGAAGCCAGTTGGGCTTTG
TAAATGGACACATATGAGCAATTATAAATAATGTGCTAATTTATATAATCTGATTCTAGT
GGATGTGGTTTTTTTAAAGGAATATGAAGCCCTTTTCAGTGCTCATCTCGATGGAGGGAA
TTCTGAGTGAGCAGTGAGTCCAGCATGTGATCCATGTCAGTAGGCTTCTCGTCTTTTAAG
TCCTCATCTGTTCTTTCTCTTAATGACTGAAGCATAAATTGCTTCAGAGAAATTTAAATA
CTAGAATTTGAACTTTATACATACTATTTGTAGTTCCTTTTTATTTTTCAAGGGTGAACT
GCTTTTTAATAAATGAGTATTTGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCCCACAGCCCCCAGAAGACTGCTTTGCGTTGCTCAGGGGCCGAGGGCGCGCGTGACTC
TCGTACTCAATGTGAAGGGTGTGCCTCCGCAGCCGAGGGCGTAGAAGTGGGGACGCTGCA
TCCTCGGGGCCGCTGCACTCGCTTTCCCTTCGTTGTCGCGAACTCAGTCCGCCCGGGAGG
CACCCCGTGACCGGTGCGATGAGTGCCAACGAAGACCAGGAGATGGAACTGGAGGCATTG
CGTTCCATTTATGAAGGAGATGAAAGTTTCCGGGAATTAAGTCCAGTTTCATTTCAATAT
AGGATAGGTGAAAACGGTGATCCGAAAGCCTTTTTAATAGAGATTTCCTGGACAGAAACC
TATCCCCAGACCCCTCCAATCATATCTATGAACGCCTTTTTTAACAACACCATATCATCA
GCTGTAAAGCAGAGCATCTTAGCCAAGTTACAGGAGGCAGTGGAAGTTAATCTCGGGACT
GCCATGACGTACACGTTGTTCGAATACGCCAAGGACAATAAGGAGCAGTTCATGGAGAAT
CACCATCCCATTCATTCTGCTACATCCATAAGCAATATCATCTCAACTGAAGCTCCAAAC
ACAGCCCCATCCAGTAAGAAAAAAGACAAAAAAGAACAACTTTCAAAAGCCCAGAAACGT
AAGCTAGCAGATAAAACAGATCACAAAGGAGAACTTCCTCGAGGATGGAACTGGGTTGAT
GTGGTGAAGCATTTAAGCAAAACTGGCTCTAAAGATGATGAATAGTTCTTGGAATTTGAG
ACGAGGGAAGCGCATCCCTTAAAAAATAAACGGGGTTCAGAATCTTTCATTACTCTTTTC
TGGAATTGAGGTGACTTTTTATAAAACAATTTTTTTGTATGTTTCTTATGTAAAAAGAAA
TGTTTTAAGCTGAACGTTCATGAAGAGATCTGGTTGTGTTAAATTATTTTCACAAACTTG
CCTTAATAAAAGGTGAACATTACTACTGTTTAGTATGCTCTGGAAGCCAGTTGGGCTTTG
TAAATGGACACATATGAGCAATTATAAATAATGTGCTAATTTATATAATCTGATTCTAGT
GGATGTGGTTTTTTTAAAGGAATATGAAGCCCTTTTCAGTGCTCATCTCGATGGAGGGAA
TTCTGAGTGAGCAGTGAGTCCAGCATGTGATCCATGTCAGTAGGCTTCTCGTCTTTTAAG
TCCTCATCTGTTCTTTCTCTTAATGACTGAAGCATAAATTGCTTCAGAGAAATTTAAATA
CTAGAATTTGAACTTTATACATACTATTTGTAGTTCCTTTTTATTTTTCAAGGGTGAACT
GCTTTTTAATAAATGAGTATTTGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6NW29_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6NW29_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               202-320, + strand, RNAz p=0.81428

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               202-320, + strand, RNAz p=0.81428

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               122-580, gnl|bosTau2|chr15 (34344443-34343997)
               

               
               122-580, gnl|Hg17|chr7 (39667972-39667497)
               


               
               735-1344, gnl|bosTau2|chr15 (34343206-34342592)
               

               
               735-1344, gnl|Hg17|chr7 (39667363-39666749)
               

               
               735-1344, gnl|Mm7|chr8 (46328683-46329264)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-580, gnl|bosTau2|chr15 (34344443-34343997)
               

               
               122-580, gnl|Hg17|chr7 (39667972-39667497)
               


               
               735-1344, gnl|bosTau2|chr15 (34343206-34342592)
               

               
               735-1344, gnl|Hg17|chr7 (39667363-39666749)
               

               
               735-1344, gnl|Mm7|chr8 (46328683-46329264)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               sag (0.36543)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               sag (0.36543)
               

               
               nlu (0.191681)
               

               
               nep (0.183925)
               

               
               gul (0.177588)
               

               
               nje (0.16592)
               

               
               nco (0.161734)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               sug (0.127291)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	122-580, gnl\|bosTau2\|chr15 (34344443-34343997)
	122-580, gnl\|Hg17\|chr7 (39667972-39667497)

	735-1344, gnl\|bosTau2\|chr15 (34343206-34342592)
	735-1344, gnl\|Hg17\|chr7 (39667363-39666749)
	735-1344, gnl\|Mm7\|chr8 (46328683-46329264)

	sag (0.36543)
	nlu (0.191681)
	nep (0.183925)
	gul (0.177588)
	nje (0.16592)
	nco (0.161734)
	isp (0.150376)
	liv (0.146284)
	spl (0.143184)
	cst (0.140036)
	hlv (0.139256)
	ste (0.135208)
	pla (0.133672)
	lyg (0.133103)
	sug (0.127291)
	cty (0.10408)
	eje (0.0988338)