Non-Coding RNA Search

Ss1.1-rnco1931b_d7.5

Sequence:


               
               AAATTCTAAAAATGCCAAAGCCAAGCAAGCCAGAATTCTTCTTCTGGGACTTGACTCTGC
TGGGAAATCAACTCTCCTTTACAAATTAAAGCTTGCTAAGGATATTGAGACTACCCCAAC
AATAGGTTTCAATGTGGAGATGATGGAGTTGGAAAAGGGTCTTCAACTCACAGTCTGGGA
TGTTGGAGGACAGGAAAAAATGAGAACCGTATGGAGTCTCTACTGTGAGAACACTGATGG
GCTGGTGTATGTTGTGGACAGTTCAGATACACAGCGACTGGAAGACTCCAGGAGAGAGTT
TGAGCACATTTTGAAGAATGAGCACATTAAAAATGTGCCTGTTATCCTGTTAGCCAACAA
ACAAGATGTGCCTGGAGCAATGAATGCAGAGGAAATCACCAGAATGTTTAAAGTGAAGAA
ACTCTGCAGTGACCGGAACTGGTACGTGCAGCCCTGCTGTGCCGTCACTGGGGATGGATT
GATGGAGGGGTTCCGGAAGTTAACTGGGTTTGTGAAAAGCCACATGAAGTCAAGAGGAGA
CACTTTAGCATTCTTTAAGCAGAACTGAGGTCCAAGTGGGGAAAGAGACACTGATAAAGA
TGAAAGGGTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATTCTAAAAATGCCAAAGCCAAGCAAGCCAGAATTCTTCTTCTGGGACTTGACTCTGC
TGGGAAATCAACTCTCCTTTACAAATTAAAGCTTGCTAAGGATATTGAGACTACCCCAAC
AATAGGTTTCAATGTGGAGATGATGGAGTTGGAAAAGGGTCTTCAACTCACAGTCTGGGA
TGTTGGAGGACAGGAAAAAATGAGAACCGTATGGAGTCTCTACTGTGAGAACACTGATGG
GCTGGTGTATGTTGTGGACAGTTCAGATACACAGCGACTGGAAGACTCCAGGAGAGAGTT
TGAGCACATTTTGAAGAATGAGCACATTAAAAATGTGCCTGTTATCCTGTTAGCCAACAA
ACAAGATGTGCCTGGAGCAATGAATGCAGAGGAAATCACCAGAATGTTTAAAGTGAAGAA
ACTCTGCAGTGACCGGAACTGGTACGTGCAGCCCTGCTGTGCCGTCACTGGGGATGGATT
GATGGAGGGGTTCCGGAAGTTAACTGGGTTTGTGAAAAGCCACATGAAGTCAAGAGGAGA
CACTTTAGCATTCTTTAAGCAGAACTGAGGTCCAAGTGGGGAAAGAGACACTGATAAAGA
TGAAAGGGTAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57110084|ref|XP_545258.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57110084|ref|XP_545258.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               2-120, - strand, RNAz p=0.814315

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               2-120, - strand, RNAz p=0.814315

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-612, gnl|bosTau2|chr1 (71116706-71117316)
               

               
               2-612, gnl|Hg17|chr3 (161877849-161878469)
               

               
               2-612, gnl|Mm7|chr3 (69323540-69324133)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-612, gnl|bosTau2|chr1 (71116706-71117316)
               

               
               2-612, gnl|Hg17|chr3 (161877849-161878469)
               

               
               2-612, gnl|Mm7|chr3 (69323540-69324133)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               rec (0.17307)
               

               
               nco (0.161734)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               rec (0.17307)
               

               
               nco (0.161734)

	2-612, gnl\|bosTau2\|chr1 (71116706-71117316)
	2-612, gnl\|Hg17\|chr3 (161877849-161878469)
	2-612, gnl\|Mm7\|chr3 (69323540-69324133)