Non-Coding RNA Search

Ss1.1-rnco1931b_d8.5

Sequence:


               
               GAGTAATGCGACAGCTCAGAATTTATGTAACTGCTTGAAAAACGTCGATTCGGTTGAGGT
CCAAGATGTGCTGAAAGGTTTCTTACAGGAAAGTTTGGAAGTTGAACTGGAAGAGGAAGC
CTCAGGAACTGTCTTCTGTGAAGACCCTCTCTGTGGTAATTGAGTGTAGCCTCCAGGACG
GGGGTGCCGCACAGCCTGTGGAATTGGCTCCTCTCACAGGCCCACCCGCAGCTCGCATTA
TTCAGGGGCAAGGGGACTGTGAAATATTCGGAAACCTTGAGGAAGAAAAAAGCCTCTGTA
CCATCAAGATTTTTTTTACCCCCTGCTCACATCATCCCACCCGGCTTCCCCACCCAAACA
AATATTCTTCCAAAGGTGCTTAAAATGACTCAACTCAGTCAGGTGAGAAATGTGCTAATT
TTCCTTTTGGAGTCTGTGAACTATGAAATTCATATCAAGGGTTTGAAACATTTTTAGCAA
TTACGTGGTCGCGTACTTAAATTGCACCAATTTCGTTTAAGCTTTTTTCATCATAACATT
AATAATGAAGAGAGGTTCCTGTTCCTTTAGCTCCCTCGATGCAGACCGACCTGCCGCTGG
GTGCAGTATGTCTTTTTATGTGGGTGTGATTTCCATAGCTCACATTACTAACCGGTCTGT
CTAGTGGTCTGTTAAACCATTAAGCCAATCATGTCACCTGGCTTCTAGGGTGATTAGGAA
GCAATGTCAACCTCTCTCCAGCAGTGTTGGTGCAAACGCTCAGAGTGATCCTCTCACCTC
ACTGGAGATGTTCAGCTGGATCCATTGTCAGAGTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGTAATGCGACAGCTCAGAATTTATGTAACTGCTTGAAAAACGTCGATTCGGTTGAGGT
CCAAGATGTGCTGAAAGGTTTCTTACAGGAAAGTTTGGAAGTTGAACTGGAAGAGGAAGC
CTCAGGAACTGTCTTCTGTGAAGACCCTCTCTGTGGTAATTGAGTGTAGCCTCCAGGACG
GGGGTGCCGCACAGCCTGTGGAATTGGCTCCTCTCACAGGCCCACCCGCAGCTCGCATTA
TTCAGGGGCAAGGGGACTGTGAAATATTCGGAAACCTTGAGGAAGAAAAAAGCCTCTGTA
CCATCAAGATTTTTTTTACCCCCTGCTCACATCATCCCACCCGGCTTCCCCACCCAAACA
AATATTCTTCCAAAGGTGCTTAAAATGACTCAACTCAGTCAGGTGAGAAATGTGCTAATT
TTCCTTTTGGAGTCTGTGAACTATGAAATTCATATCAAGGGTTTGAAACATTTTTAGCAA
TTACGTGGTCGCGTACTTAAATTGCACCAATTTCGTTTAAGCTTTTTTCATCATAACATT
AATAATGAAGAGAGGTTCCTGTTCCTTTAGCTCCCTCGATGCAGACCGACCTGCCGCTGG
GTGCAGTATGTCTTTTTATGTGGGTGTGATTTCCATAGCTCACATTACTAACCGGTCTGT
CTAGTGGTCTGTTAAACCATTAAGCCAATCATGTCACCTGGCTTCTAGGGTGATTAGGAA
GCAATGTCAACCTCTCTCCAGCAGTGTTGGTGCAAACGCTCAGAGTGATCCTCTCACCTC
ACTGGAGATGTTCAGCTGGATCCATTGTCAGAGTCC

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               76-816, gnl|bosTau2|chr1 (67478675-67477917)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               76-816, gnl|bosTau2|chr1 (67478675-67477917)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               spl (0.143184)
               

               
               ecc (0.115035)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               spl (0.143184)
               

               
               ecc (0.115035)