Non-Coding RNA Search

Ss1.1-rnco1931b_n23.5

Sequence:


               
               GGAGCGCATGGTGGAGATTGGCAGCCGCTGGCAGCGCATCTCCCAGAGCCAGAAGGAACA
CTACAAAAAGCTGGCCGAGGAGCAGCAGAAGCAGTACAAAGTACACCTGGACCTCTGGGT
CAAGAGCCTGTCTCCTCAGGACCGTGCAGCATATAAAGAGTACATCTCCAGCAAACGTAA
GAGCATGACCAAGCTTCGAGGCCCGAACCCCAAGTCCAGCCGGACTACCCTGCAGTCTAA
GTCGGAGTCTGAGGAGGACGATGAAGAGGATGAGGAGGACGAGGACGAGGACGAGGAGGA
GGAAGATGACGAGAACGGGGACTCCTCCGAGGATGGCGGCGACTCCTCCGAGTCCAGCAG
CGAGGACGAGAGCGAGGACGGGGATGAGAACGAGGATGAGGATGAGGACGAGGACGACGA
CGAGGATGACGACGAGGACGAGGACAACGAATCCGAGGGCAGCAGCTCCAGCTCGTCCTC
CTCGGGGGACTCCTCGGACTCTGACTCCAACTGAGGCTCAGCCCCACGCGGGGCGCCCCT
CCTCGACTGACCACCTTTGTTTCTCTCCCATGTTCTGTCCCCTGCCCCCTGGCCTCCCCC
ACTTTCTTTCTTTCTTTTTCTTTTTTCTTTTTTTTTTAAAAAAAAAAACAAAATACAGTG
GGGAGAGGCACTGGAGGCGCCCAGGCTAAAACTCTGCGGCCTTAAAGCCATCAGCCCTGG
AGGGCCCTCCAGGGAGCGCAACCACCAGACTGAGCCACCACTGGACCGGCCCAGCCCACC
CCTTTTTTGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGCGCATGGTGGAGATTGGCAGCCGCTGGCAGCGCATCTCCCAGAGCCAGAAGGAACA
CTACAAAAAGCTGGCCGAGGAGCAGCAGAAGCAGTACAAAGTACACCTGGACCTCTGGGT
CAAGAGCCTGTCTCCTCAGGACCGTGCAGCATATAAAGAGTACATCTCCAGCAAACGTAA
GAGCATGACCAAGCTTCGAGGCCCGAACCCCAAGTCCAGCCGGACTACCCTGCAGTCTAA
GTCGGAGTCTGAGGAGGACGATGAAGAGGATGAGGAGGACGAGGACGAGGACGAGGAGGA
GGAAGATGACGAGAACGGGGACTCCTCCGAGGATGGCGGCGACTCCTCCGAGTCCAGCAG
CGAGGACGAGAGCGAGGACGGGGATGAGAACGAGGATGAGGATGAGGACGAGGACGACGA
CGAGGATGACGACGAGGACGAGGACAACGAATCCGAGGGCAGCAGCTCCAGCTCGTCCTC
CTCGGGGGACTCCTCGGACTCTGACTCCAACTGAGGCTCAGCCCCACGCGGGGCGCCCCT
CCTCGACTGACCACCTTTGTTTCTCTCCCATGTTCTGTCCCCTGCCCCCTGGCCTCCCCC
ACTTTCTTTCTTTCTTTTTCTTTTTTCTTTTTTTTTTAAAAAAAAAAACAAAATACAGTG
GGGAGAGGCACTGGAGGCGCCCAGGCTAAAACTCTGCGGCCTTAAAGCCATCAGCCCTGG
AGGGCCCTCCAGGGAGCGCAACCACCAGACTGAGCCACCACTGGACCGGCCCAGCCCACC
CCTTTTTTGCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|49259493|pdb|1V63|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|49259493|pdb|1V63|A

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               574-730, - strand, RNAz p=0.999963

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               574-730, - strand, RNAz p=0.999963

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               1-124, gnl|bosTau2|chr19 (38087492-38087615)
               

               
               1-124, gnl|canFam2|chr9 (22507038-22506813)
               

               
               1-124, gnl|danRer3|chr3 (10855924-10855709)
               

               
               1-124, gnl|dasNov1|scaffold_141654 (4068-3842)
               

               
               1-124, gnl|echTel1|scaffold_193686 (682-902)
               

               
               1-124, gnl|fr1|chrUn (170765206-170764978)
               

               
               1-124, gnl|hg17|chr17 (39642232-39642457)
               

               
               1-124, gnl|Hg17|chr17 (39642369-39642246)
               

               
               1-124, gnl|loxAfr1|scaffold_89323 (11861-12087)
               

               
               1-124, gnl|mm7|chr11 (102416970-102417197)
               

               
               1-124, gnl|Mm7|chr11 (102417111-102416988)
               

               
               1-124, gnl|monDom2|scaffold_9 (12333696-12333419)
               

               
               1-124, gnl|oryCun1|scaffold_135870 (28133-27925)
               

               
               1-124, gnl|panTro1|chr19 (42830051-42830276)
               

               
               1-124, gnl|rheMac2|chr16 (54300420-54300646)
               

               
               1-124, gnl|rn3|chr10 (91401926-91402152)
               

               
               1-124, gnl|tetNig1|chrUn_random (102226816-102227038)
               

               
               1-124, gnl|xenTro1|scaffold_316 (707777-707549)
               


               
               387-792, gnl|bosTau2|chr19 (38089149-38089542)
               

               
               387-792, gnl|Hg17|chr17 (39640263-39639848)
               

               
               387-792, gnl|Mm7|chr11 (102415807-102415371)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-124, gnl|bosTau2|chr19 (38087492-38087615)
               

               
               1-124, gnl|canFam2|chr9 (22507038-22506813)
               

               
               1-124, gnl|danRer3|chr3 (10855924-10855709)
               

               
               1-124, gnl|dasNov1|scaffold_141654 (4068-3842)
               

               
               1-124, gnl|echTel1|scaffold_193686 (682-902)
               

               
               1-124, gnl|fr1|chrUn (170765206-170764978)
               

               
               1-124, gnl|hg17|chr17 (39642232-39642457)
               

               
               1-124, gnl|Hg17|chr17 (39642369-39642246)
               

               
               1-124, gnl|loxAfr1|scaffold_89323 (11861-12087)
               

               
               1-124, gnl|mm7|chr11 (102416970-102417197)
               

               
               1-124, gnl|Mm7|chr11 (102417111-102416988)
               

               
               1-124, gnl|monDom2|scaffold_9 (12333696-12333419)
               

               
               1-124, gnl|oryCun1|scaffold_135870 (28133-27925)
               

               
               1-124, gnl|panTro1|chr19 (42830051-42830276)
               

               
               1-124, gnl|rheMac2|chr16 (54300420-54300646)
               

               
               1-124, gnl|rn3|chr10 (91401926-91402152)
               

               
               1-124, gnl|tetNig1|chrUn_random (102226816-102227038)
               

               
               1-124, gnl|xenTro1|scaffold_316 (707777-707549)
               


               
               387-792, gnl|bosTau2|chr19 (38089149-38089542)
               

               
               387-792, gnl|Hg17|chr17 (39640263-39639848)
               

               
               387-792, gnl|Mm7|chr11 (102415807-102415371)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               ece (0.229305)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               clu (0.119646)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               fty (0.17584)
               

               
               nco (0.161734)
               

               
               clu (0.119646)

	1-124, gnl\|bosTau2\|chr19 (38087492-38087615)
	1-124, gnl\|canFam2\|chr9 (22507038-22506813)
	1-124, gnl\|danRer3\|chr3 (10855924-10855709)
	1-124, gnl\|dasNov1\|scaffold_141654 (4068-3842)
	1-124, gnl\|echTel1\|scaffold_193686 (682-902)
	1-124, gnl\|fr1\|chrUn (170765206-170764978)
	1-124, gnl\|hg17\|chr17 (39642232-39642457)
	1-124, gnl\|Hg17\|chr17 (39642369-39642246)
	1-124, gnl\|loxAfr1\|scaffold_89323 (11861-12087)
	1-124, gnl\|mm7\|chr11 (102416970-102417197)
	1-124, gnl\|Mm7\|chr11 (102417111-102416988)
	1-124, gnl\|monDom2\|scaffold_9 (12333696-12333419)
	1-124, gnl\|oryCun1\|scaffold_135870 (28133-27925)
	1-124, gnl\|panTro1\|chr19 (42830051-42830276)
	1-124, gnl\|rheMac2\|chr16 (54300420-54300646)
	1-124, gnl\|rn3\|chr10 (91401926-91402152)
	1-124, gnl\|tetNig1\|chrUn_random (102226816-102227038)
	1-124, gnl\|xenTro1\|scaffold_316 (707777-707549)

	387-792, gnl\|bosTau2\|chr19 (38089149-38089542)
	387-792, gnl\|Hg17\|chr17 (39640263-39639848)
	387-792, gnl\|Mm7\|chr11 (102415807-102415371)