Non-Coding RNA Search

Ss1.1-rnco1932b_m17.5

Sequence:


               
               TGTTGAGTCTCTTCCAGCGGTTCTGAGTCACCGAGGTCAGGTCCTCGTCTGACAGGGTTA
GGTGACCGGCCAGGCCCGAGCGCCACTCGAGATCCAGGGCGTGCACCGAGGGCCTCTGGG
AGAAGGGGGTGCCCCTGTAGACTTGGTCCAGCACCTTCTCCTTGACCTGGGTGATGGTGT
CCGTGTCGAGCACCCGGGCGGGCACGCGCTGCCCCGCGCTGCTGCCTGCGGCCCCGCCCG
CCCCGGGGCCCGCCAGCACCATCAGCGTCAGGGGCCGGAACTCCACATCCTCCCGCAGCA
GGCGGCTGTCGTTCAGGGTCCGCTTTGCCTTGCCTGTCACGGCGTCCACGGGGCCCTTGT
CCACCTGGTACTGGATGGCCCGGAGGAGCATGTACAGCGGCTCACCGGCCACCTCCCTCA
GGAAGGCGTACACGACAGATGGACACCCAGTTGGTGAGCAGCTTCTCCACCATGGTCTCC
GTCCTGCGCAGCATGAGCTTGGGGTTCCTGTGCACGTAGTGGGCGGCCAGGTCCCCGAGC
AGCGTCCTCAGGATGTCCGTCAGGTACTCCAGCTTGCCGTGCAGCGCCAGGGACAGCAGG
GAAGCCACGTGGCAGCGGTCCCGCTGGGAGAAGGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTTGAGTCTCTTCCAGCGGTTCTGAGTCACCGAGGTCAGGTCCTCGTCTGACAGGGTTA
GGTGACCGGCCAGGCCCGAGCGCCACTCGAGATCCAGGGCGTGCACCGAGGGCCTCTGGG
AGAAGGGGGTGCCCCTGTAGACTTGGTCCAGCACCTTCTCCTTGACCTGGGTGATGGTGT
CCGTGTCGAGCACCCGGGCGGGCACGCGCTGCCCCGCGCTGCTGCCTGCGGCCCCGCCCG
CCCCGGGGCCCGCCAGCACCATCAGCGTCAGGGGCCGGAACTCCACATCCTCCCGCAGCA
GGCGGCTGTCGTTCAGGGTCCGCTTTGCCTTGCCTGTCACGGCGTCCACGGGGCCCTTGT
CCACCTGGTACTGGATGGCCCGGAGGAGCATGTACAGCGGCTCACCGGCCACCTCCCTCA
GGAAGGCGTACACGACAGATGGACACCCAGTTGGTGAGCAGCTTCTCCACCATGGTCTCC
GTCCTGCGCAGCATGAGCTTGGGGTTCCTGTGCACGTAGTGGGCGGCCAGGTCCCCGAGC
AGCGTCCTCAGGATGTCCGTCAGGTACTCCAGCTTGCCGTGCAGCGCCAGGGACAGCAGG
GAAGCCACGTGGCAGCGGTCCCGCTGGGAGAAGGTG

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               69-416, gnl|bosTau2|chrX (13507263-13507610)
               

               
               69-416, gnl|Hg17|chrX (152562553-152562188)
               

               
               69-416, gnl|Mm7|chrX (69156163-69155782)
               


               
               483-636, gnl|bosTau2|chrX (13508098-13508251)
               

               
               483-636, gnl|Hg17|chrX (152561706-152561553)
               

               
               483-636, gnl|Mm7|chrX (69155168-69155015)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               69-416, gnl|bosTau2|chrX (13507263-13507610)
               

               
               69-416, gnl|Hg17|chrX (152562553-152562188)
               

               
               69-416, gnl|Mm7|chrX (69156163-69155782)
               


               
               483-636, gnl|bosTau2|chrX (13508098-13508251)
               

               
               483-636, gnl|Hg17|chrX (152561706-152561553)
               

               
               483-636, gnl|Mm7|chrX (69155168-69155015)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               eru (0.120048)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               eru (0.120048)

	69-416, gnl\|bosTau2\|chrX (13507263-13507610)
	69-416, gnl\|Hg17\|chrX (152562553-152562188)
	69-416, gnl\|Mm7\|chrX (69156163-69155782)

	483-636, gnl\|bosTau2\|chrX (13508098-13508251)
	483-636, gnl\|Hg17\|chrX (152561706-152561553)
	483-636, gnl\|Mm7\|chrX (69155168-69155015)