Non-Coding RNA Search

Ss1.1-rnco1934b_i4.5

Sequence:


               
               CGGGGGCCGCGGGGGCCACGGGGGCCACGGGCCGCGCGCGGCCGCGCCGGCGCGTCGAGG
GGGAGAGGTAGCCGCTGCGATGGACGTGTTCCTCATGATCCGGCGCCACAAGACCACCAT
CTTCACTGACGCTAAGGAGTCGAGTACCGTGTTCGAGCTGAAGCGCATCGTCGAGGGCAT
CCTCAAGCGGCCGCCGGACGAGCAGCGGCTGTACAAGGACGACCAGCTTCTGGATGACGG
CAAGACCTTGGGCGAGTGCGGCTTCACCAGCCAGACCGCGCGGCCTCAGGCCCCAGCCAC
CGTGGGGCTGGCCTTCCGGGCAGATGAAGCGTTCGAGGCCCTGCGCATTGAGCCCTTCTC
CAGCCCGCCTGAGCTGCCCGACGTGATGAAGCCGCAGGACTCAGGAAGCAGCGCCAATGA
ACAAGCTGTGCAGTGAGGGTCTCCCTGCGCACCCCCCAATAAAAGATTTGGGTGTCCACC
AAAAAAAAAAAACTTTCTGCACACCCTTTCCTGACTCAGGCATCACCCCACCGCCGCTGC
CCGCCCCCCCCCCGCCCCCCCGGCTTCCTTGCCAGGTCAACCTGCTGGACCACCAGCTCG
AGTCGAGCTATCCATCCGAAACCCACAGCCTAGCCTCCTGAAGGCCATGGGAAGAAAGGA
ACCCAGAGCCTGGGGACAAAAGCTTTGGGGCACCACTTCCTCCGAGGCGCCCCTCTCCTG
GCATAGTTTGATGCAGAACCACCCCCCCCCAGGGGGGCCCCACGGTCTATGGTGTCCTGG
GCAAGGGCGGGGCTGTACAAAGAGCTCTTCTCCCGCCCTTAATAAACGCTCTATATGCCC
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGGGGCCGCGGGGGCCACGGGGGCCACGGGCCGCGCGCGGCCGCGCCGGCGCGTCGAGG
GGGAGAGGTAGCCGCTGCGATGGACGTGTTCCTCATGATCCGGCGCCACAAGACCACCAT
CTTCACTGACGCTAAGGAGTCGAGTACCGTGTTCGAGCTGAAGCGCATCGTCGAGGGCAT
CCTCAAGCGGCCGCCGGACGAGCAGCGGCTGTACAAGGACGACCAGCTTCTGGATGACGG
CAAGACCTTGGGCGAGTGCGGCTTCACCAGCCAGACCGCGCGGCCTCAGGCCCCAGCCAC
CGTGGGGCTGGCCTTCCGGGCAGATGAAGCGTTCGAGGCCCTGCGCATTGAGCCCTTCTC
CAGCCCGCCTGAGCTGCCCGACGTGATGAAGCCGCAGGACTCAGGAAGCAGCGCCAATGA
ACAAGCTGTGCAGTGAGGGTCTCCCTGCGCACCCCCCAATAAAAGATTTGGGTGTCCACC
AAAAAAAAAAAACTTTCTGCACACCCTTTCCTGACTCAGGCATCACCCCACCGCCGCTGC
CCGCCCCCCCCCCGCCCCCCCGGCTTCCTTGCCAGGTCAACCTGCTGGACCACCAGCTCG
AGTCGAGCTATCCATCCGAAACCCACAGCCTAGCCTCCTGAAGGCCATGGGAAGAAAGGA
ACCCAGAGCCTGGGGACAAAAGCTTTGGGGCACCACTTCCTCCGAGGCGCCCCTCTCCTG
GCATAGTTTGATGCAGAACCACCCCCCCCCAGGGGGGCCCCACGGTCTATGGTGTCCTGG
GCAAGGGCGGGGCTGTACAAAGAGCTCTTCTCCCGCCCTTAATAAACGCTCTATATGCCC
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61846261|ref|XP_609413.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61846261|ref|XP_609413.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               71-487, gnl|bosTau2|chr25 (23562071-23561645)
               

               
               71-487, gnl|Hg17|chr11 (129408332-129407911)
               

               
               71-487, gnl|Mm7|chr17 (72728991-72728558)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               71-487, gnl|bosTau2|chr25 (23562071-23561645)
               

               
               71-487, gnl|Hg17|chr11 (129408332-129407911)
               

               
               71-487, gnl|Mm7|chr17 (72728991-72728558)

Expressed library(ies): 39 entry(ies)

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Expressed library(ies): 39 entry(ies)

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               fce (1.08637)
               

               
               mcp (1.02389)
               

               
               nbm (0.695272)
               

               
               ece (0.687916)
               

               
               eye (0.682012)
               

               
               nms (0.641574)
               

               
               mas (0.630915)
               

               
               cli (0.611247)
               

               
               col (0.585023)
               

               
               nlu (0.575043)
               

               
               pty (0.570858)
               

               
               cov (0.528611)
               

               
               fbs (0.526039)
               

               
               cje (0.495704)
               

               
               nco (0.485201)
               

               
               ebs (0.473205)
               

               
               med (0.465008)
               

               
               cag (0.453583)
               

               
               nca (0.410621)
               

               
               fli (0.405762)
               

               
               ute (0.398353)
               

               
               jej (0.395687)
               

               
               eje (0.395335)
               

               
               eru (0.360144)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               ecc (0.345105)
               

               
               nje (0.33184)
               

               
               che (0.272628)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               spc (0.113366)

Expressed library(ies): 39 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (1.08637)
               

               
               mcp (1.02389)
               

               
               nbm (0.695272)
               

               
               ece (0.687916)
               

               
               eye (0.682012)
               

               
               nms (0.641574)
               

               
               mas (0.630915)
               

               
               cli (0.611247)
               

               
               col (0.585023)
               

               
               nlu (0.575043)
               

               
               pty (0.570858)
               

               
               cov (0.528611)
               

               
               fbs (0.526039)
               

               
               cje (0.495704)
               

               
               nco (0.485201)
               

               
               ebs (0.473205)
               

               
               med (0.465008)
               

               
               cag (0.453583)
               

               
               nca (0.410621)
               

               
               fli (0.405762)
               

               
               ute (0.398353)
               

               
               jej (0.395687)
               

               
               eje (0.395335)
               

               
               eru (0.360144)
               

               
               fty (0.351679)
               

               
               ill (0.351185)
               

               
               ecc (0.345105)
               

               
               nje (0.33184)
               

               
               che (0.272628)
               

               
               ese (0.253004)
               

               
               eep (0.245128)
               

               
               cly (0.241284)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               ton (0.1755)
               

               
               csp (0.161186)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               spc (0.113366)

	71-487, gnl\|bosTau2\|chr25 (23562071-23561645)
	71-487, gnl\|Hg17\|chr11 (129408332-129407911)
	71-487, gnl\|Mm7\|chr17 (72728991-72728558)

	fce (1.08637)
	mcp (1.02389)
	nbm (0.695272)
	ece (0.687916)
	eye (0.682012)
	nms (0.641574)
	mas (0.630915)
	cli (0.611247)
	col (0.585023)
	nlu (0.575043)
	pty (0.570858)
	cov (0.528611)
	fbs (0.526039)
	cje (0.495704)
	nco (0.485201)
	ebs (0.473205)
	med (0.465008)
	cag (0.453583)
	nca (0.410621)
	fli (0.405762)
	ute (0.398353)
	jej (0.395687)
	eje (0.395335)
	eru (0.360144)
	fty (0.351679)
	ill (0.351185)
	ecc (0.345105)
	nje (0.33184)
	che (0.272628)
	ese (0.253004)
	eep (0.245128)
	cly (0.241284)
	jca (0.22792)
	fcc (0.197785)
	ton (0.1755)
	csp (0.161186)
	hyp (0.142837)
	lnt (0.142308)
	spc (0.113366)