Non-Coding RNA Search

Ss1.1-rnco1934b_m21.5

Sequence:


               
               AAGGGCCCCCTTTTTCCAAAAAAATGGGGGAGGGGAAAATTTGGCCCCCCCAAGGAAAAT
TTAAAACGGCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGGAAAGGCACTTTA
AGGGGGTGAGGGAGGGGGCAGGAAGGGACAAACAGAGGGGATGGACTGACCGAGAGGCCA
GTGGTGTGCAGCCCAGCACTGCTCCTGGCCACCCAGGGTCATGGTCGGCACGGCTCAGTC
TCTGGGCAGCAGTGGCCTTCACCCGGCAGGGACCTCCAGGTACCGCACAGGGCTCGAGAA
GGGGCCTGGCCGGGCCCAGTAGTCCACGGCACGGACCCGGTAGGAGCCAGAGACAACAGC
CGTGTCTGGGCTGAACACGAAGAGGTTAAAGGTCGAAGGCTTCCTGTCCACGCGTGTGTA
CACCCCACCCTCCGGGCAGAACTGGATCTCATAGTCCCACAGGCACTTGGAGCCCACGCG
CTCATCCGACCAGACCAAAAGCAGCTGCCCGCGGGTCAAGGGCAGGGCGCGGAGCCGTGA
TACCTGGCCGGGCGGCGCCTCGGGGCGCGCGCAGACGTGCACCAGCAGGAGCGAGGGCAG
GGGCAGCTCCGGGCTCAGCGTCAGGCGGCCACTGGGGGGGAAGGGCAGCGGTCTCACGGC
CGCCGGGTCCTCGGCCGCGCGCATGCGCCGGAGCTGCTGGGCGGAGGGGAAGACCGGCCG
GCCCAGGCGCCGCCACTCGCCGTCGGGGCTGGAGATGGAGTTGTCCATGTAGAGCTGGAC
AAAGACGAGCCCAGGGCCCGGGGGCACCCCGTGCAAGCTCAGGATCAAGGGGACGCTGCG
GTTGGCGTGGGCGCGGGTGTCGTCGCTCGCGTAGACCAGCACCGTGGCGCGCCAGGCATC
GGCGGGGCCGGTGGGGCGGTGGGCGCTGGCCAGGACGCCCACTGTGTGGTTGCTGTCCAG
CACCCTCCCGGCCTGCGACACCTCGGCCCAGAGCTGCTCGCTGTCCAGCAGGGCCAGCAG
CCCCATGGCCGTGAGCACCGGCTTGCGCAGCAGCTGCACGTGTGGTGGGCGCGTGTTGTT
GACCTGGAAGCGTGCGGTGAGCGTGCGCTGGGAGAAGGGGTGCGGGTGGTAACTCAGGAA
GGCATTGTCGTTGCTCAGCAGCGTGTAGCGGATGGAGGAGCTGGTGTTGGCCACCAGCAG
GTTCTGGTGCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGGCCCCCTTTTTCCAAAAAAATGGGGGAGGGGAAAATTTGGCCCCCCCAAGGAAAAT
TTAAAACGGCCCCCCCCTTTTTTTTTTTTTTTTTTTTTTTGTGTGTGGAAAGGCACTTTA
AGGGGGTGAGGGAGGGGGCAGGAAGGGACAAACAGAGGGGATGGACTGACCGAGAGGCCA
GTGGTGTGCAGCCCAGCACTGCTCCTGGCCACCCAGGGTCATGGTCGGCACGGCTCAGTC
TCTGGGCAGCAGTGGCCTTCACCCGGCAGGGACCTCCAGGTACCGCACAGGGCTCGAGAA
GGGGCCTGGCCGGGCCCAGTAGTCCACGGCACGGACCCGGTAGGAGCCAGAGACAACAGC
CGTGTCTGGGCTGAACACGAAGAGGTTAAAGGTCGAAGGCTTCCTGTCCACGCGTGTGTA
CACCCCACCCTCCGGGCAGAACTGGATCTCATAGTCCCACAGGCACTTGGAGCCCACGCG
CTCATCCGACCAGACCAAAAGCAGCTGCCCGCGGGTCAAGGGCAGGGCGCGGAGCCGTGA
TACCTGGCCGGGCGGCGCCTCGGGGCGCGCGCAGACGTGCACCAGCAGGAGCGAGGGCAG
GGGCAGCTCCGGGCTCAGCGTCAGGCGGCCACTGGGGGGGAAGGGCAGCGGTCTCACGGC
CGCCGGGTCCTCGGCCGCGCGCATGCGCCGGAGCTGCTGGGCGGAGGGGAAGACCGGCCG
GCCCAGGCGCCGCCACTCGCCGTCGGGGCTGGAGATGGAGTTGTCCATGTAGAGCTGGAC
AAAGACGAGCCCAGGGCCCGGGGGCACCCCGTGCAAGCTCAGGATCAAGGGGACGCTGCG
GTTGGCGTGGGCGCGGGTGTCGTCGCTCGCGTAGACCAGCACCGTGGCGCGCCAGGCATC
GGCGGGGCCGGTGGGGCGGTGGGCGCTGGCCAGGACGCCCACTGTGTGGTTGCTGTCCAG
CACCCTCCCGGCCTGCGACACCTCGGCCCAGAGCTGCTCGCTGTCCAGCAGGGCCAGCAG
CCCCATGGCCGTGAGCACCGGCTTGCGCAGCAGCTGCACGTGTGGTGGGCGCGTGTTGTT
GACCTGGAAGCGTGCGGTGAGCGTGCGCTGGGAGAAGGGGTGCGGGTGGTAACTCAGGAA
GGCATTGTCGTTGCTCAGCAGCGTGTAGCGGATGGAGGAGCTGGTGTTGGCCACCAGCAG
GTTCTGGTGCTG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|34875822|ref|XP_341180.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|34875822|ref|XP_341180.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               100-368, gnl|bosTau2|chr6 (63549551-63549818)
               

               
               100-368, gnl|Hg17|chr4 (988182-987875)
               

               
               100-368, gnl|Mm7|chr5 (107864454-107864196)
               


               
               543-742, gnl|bosTau2|chr6 (63550380-63550579)
               

               
               543-742, gnl|Hg17|chr4 (987089-986788)
               

               
               543-742, gnl|Mm7|chr5 (107862960-107862731)
               


               
               791-1012, gnl|bosTau2|chr6 (63550796-63551016)
               

               
               791-1012, gnl|Hg17|chr4 (986563-986343)
               

               
               791-1012, gnl|Mm7|chr5 (107862525-107862305)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               100-368, gnl|bosTau2|chr6 (63549551-63549818)
               

               
               100-368, gnl|Hg17|chr4 (988182-987875)
               

               
               100-368, gnl|Mm7|chr5 (107864454-107864196)
               


               
               543-742, gnl|bosTau2|chr6 (63550380-63550579)
               

               
               543-742, gnl|Hg17|chr4 (987089-986788)
               

               
               543-742, gnl|Mm7|chr5 (107862960-107862731)
               


               
               791-1012, gnl|bosTau2|chr6 (63550796-63551016)
               

               
               791-1012, gnl|Hg17|chr4 (986563-986343)
               

               
               791-1012, gnl|Mm7|chr5 (107862525-107862305)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               cga (0.279096)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               jca (0.22792)
               

               
               nms (0.213858)
               

               
               nep (0.183925)
               

               
               fty (0.17584)
               

               
               ton (0.1755)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               eru (0.120048)

	100-368, gnl\|bosTau2\|chr6 (63549551-63549818)
	100-368, gnl\|Hg17\|chr4 (988182-987875)
	100-368, gnl\|Mm7\|chr5 (107864454-107864196)

	543-742, gnl\|bosTau2\|chr6 (63550380-63550579)
	543-742, gnl\|Hg17\|chr4 (987089-986788)
	543-742, gnl\|Mm7\|chr5 (107862960-107862731)

	791-1012, gnl\|bosTau2\|chr6 (63550796-63551016)
	791-1012, gnl\|Hg17\|chr4 (986563-986343)
	791-1012, gnl\|Mm7\|chr5 (107862525-107862305)

	cga (0.279096)
	jca (0.22792)
	nms (0.213858)
	nep (0.183925)
	fty (0.17584)
	ton (0.1755)
	nco (0.161734)
	csp (0.161186)
	pla (0.133672)
	eru (0.120048)