Ss1.1-rnco1935b_g21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGATTCTGGAGACCCACAGCAATAAAACCAGCACAGTATTGAAAGTCTTGAAGCCAGACA CCACGTATCAGGTCAAAGTCCAGGTCCAGTGTCTGAGCAAGGTGCACAGCACCAACGACT TTGTGACCCTGCGGACTCCAGAAGGATTGCCAGATGCCCCTCAGAACCTCCAGCTGTCAC TCCACAGGGAAGTGGAAGGGGTGATCGTGGGCCACTGGACCCCTCCCATCCACACCCACG GCCTCATCCGAGAGTACATCGTAGAATACAGCAGGAGTGGTTCCAAGATGTGGGCCTCCC AGAGGTCTGCCGGCAACAGTACAGAAATAAGGAACCTACTCCTCAACGCCCCGTACACTG TCCGAGTGGCGGCAGTCACTAGTCGTGGAATAGGAAACTGGAGCGATTCTAAATCCATTA CCACCACCAACAAAGGAAAAGTGATTCCACAACCAGACATCCACATAGACAGCTACGACG AAAACTCCCTGAGCTTTACCCTGTCCATGGACAGTGACATCAAGGTGAACGGCTATGTGG TGAACCTCTTCTGGGCCTTTGATACCCATGCACAGGAGCAGAGAACCTTGAACTTCCAAG GGAGCATGTTATCACACAGAGTTGGCAACCTGACCGCTCATACACCCTACGAGATTTCTG CCTGGGCCAAGACAGACTTGGGGGACAGTCCTCTGGCATTTGAGCATGTCACGACCAGAG GCGTCCGCCCACCCGCCCCAAGCCTCAAAGCCAAGGCCATCAATCAGACGGCGGTGGAAT GCACCTGGACCGGCCCCAGGAATGTGGTTTACGGTATTTTCTATGCTACGTCCTTTCTTG ACCTCTATCGAAACCCCAAGAGCGTGACGACTTCACAGCACAACAAAACAGTCCTTGTCA GTAGAGATGAGC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGATTCTGGAGACCCACAGCAATAAAACCAGCACAGTATTGAAAGTCTTGAAGCCAGACA CCACGTATCAGGTCAAAGTCCAGGTCCAGTGTCTGAGCAAGGTGCACAGCACCAACGACT TTGTGACCCTGCGGACTCCAGAAGGATTGCCAGATGCCCCTCAGAACCTCCAGCTGTCAC TCCACAGGGAAGTGGAAGGGGTGATCGTGGGCCACTGGACCCCTCCCATCCACACCCACG GCCTCATCCGAGAGTACATCGTAGAATACAGCAGGAGTGGTTCCAAGATGTGGGCCTCCC AGAGGTCTGCCGGCAACAGTACAGAAATAAGGAACCTACTCCTCAACGCCCCGTACACTG TCCGAGTGGCGGCAGTCACTAGTCGTGGAATAGGAAACTGGAGCGATTCTAAATCCATTA CCACCACCAACAAAGGAAAAGTGATTCCACAACCAGACATCCACATAGACAGCTACGACG AAAACTCCCTGAGCTTTACCCTGTCCATGGACAGTGACATCAAGGTGAACGGCTATGTGG TGAACCTCTTCTGGGCCTTTGATACCCATGCACAGGAGCAGAGAACCTTGAACTTCCAAG GGAGCATGTTATCACACAGAGTTGGCAACCTGACCGCTCATACACCCTACGAGATTTCTG CCTGGGCCAAGACAGACTTGGGGGACAGTCCTCTGGCATTTGAGCATGTCACGACCAGAG GCGTCCGCCCACCCGCCCCAAGCCTCAAAGCCAAGGCCATCAATCAGACGGCGGTGGAAT GCACCTGGACCGGCCCCAGGAATGTGGTTTACGGTATTTTCTATGCTACGTCCTTTCTTG ACCTCTATCGAAACCCCAAGAGCGTGACGACTTCACAGCACAACAAAACAGTCCTTGTCA GTAGAGATGAGC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 659-778, - strand, RNAz p=0.909067 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 659-778, - strand, RNAz p=0.909067 |
| Aligned organism(s): 56 entry(ies) | More info |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
| 6-147, gnl|bosTau2|chr15 (18449585-18449726) | |
| 6-147, gnl|canFam2|chr5 (15526849-15526603) | |
| 6-147, gnl|danRer3|chr15 (24602038-24602240) | |
| 6-147, gnl|echTel1|scaffold_231022 (741-512) | |
| 6-147, gnl|fr1|chrUn (125062075-125061850) | |
| 6-147, gnl|galGal2|chr24 (3414407-3414156) | |
| 6-147, gnl|hg17|chr11 (120981292-120981541) | |
| 6-147, gnl|Hg17|chr11 (120981349-120981490) | |
| 6-147, gnl|loxAfr1|scaffold_298 (151962-152206) | |
| 6-147, gnl|mm7|chr9 (41925879-41925663) | |
| 6-147, gnl|Mm7|chr9 (41925823-41925682) | |
| 6-147, gnl|monDom2|scaffold_2 (115584191-115583952) | |
| 6-147, gnl|oryCun1|scaffold_204650 (5585-5798) | |
| 6-147, gnl|panTro1|chr9 (123028338-123028588) | |
| 6-147, gnl|rheMac2|chr14 (120030583-120030830) | |
| 6-147, gnl|rn3|chr8 (44991827-44991598) | |
| 6-147, gnl|tetNig1|chr16 (8229624-8229808) | |
| 6-147, gnl|xenTro1|scaffold_999 (143882-143643) | |
| 148-280, gnl|bosTau2|chr15 (18452234-18452367) | |
| 148-280, gnl|canFam2|chr5 (15524318-15524185) | |
| 148-280, gnl|danRer3|chr15 (24602312-24602432) | |
| 148-280, gnl|dasNov1|scaffold_8702 (18962-18829) | |
| 148-280, gnl|echTel1|scaffold_316145 (148612-148479) | |
| 148-280, gnl|fr1|chrUn (125061817-125061697) | |
| 148-280, gnl|galGal2|chr24 (3413953-3413813) | |
| 148-280, gnl|hg17|chr11 (120982759-120982892) | |
| 148-280, gnl|Hg17|chr11 (120982764-120982897) | |
| 148-280, gnl|loxAfr1|scaffold_298 (154347-154479) | |
| 148-280, gnl|mm7|chr9 (41923843-41923710) | |
| 148-280, gnl|Mm7|chr9 (41923836-41923709) | |
| 148-280, gnl|monDom2|scaffold_2 (115582906-115582778) | |
| 148-280, gnl|oryCun1|scaffold_204650 (9689-9822) | |
| 148-280, gnl|panTro1|chr9 (123029807-123029940) | |
| 148-280, gnl|rheMac2|chr14 (120032044-120032177) | |
| 148-280, gnl|rn3|chr8 (44989950-44989817) | |
| 148-280, gnl|tetNig1|chr16 (8229877-8229999) | |
| 148-280, gnl|xenTro1|scaffold_999 (142683-142550) | |
| 620-808, gnl|bosTau2|chr15 (18461854-18462042) | |
| 620-808, gnl|canFam2|chr5 (15516431-15516211) | |
| 620-808, gnl|danRer3|chr15 (24606312-24606525) | |
| 620-808, gnl|dasNov1|scaffold_8702 (10222-9997) | |
| 620-808, gnl|echTel1|scaffold_316145 (140751-140530) | |
| 620-808, gnl|fr1|chrUn (125060868-125060691) | |
| 620-808, gnl|galGal2|chr24 (3411035-3410833) | |
| 620-808, gnl|hg17|chr11 (120990776-120991003) | |
| 620-808, gnl|Hg17|chr11 (120990788-120990976) | |
| 620-808, gnl|loxAfr1|scaffold_298 (164925-165152) | |
| 620-808, gnl|mm7|chr9 (41917476-41917249) | |
| 620-808, gnl|Mm7|chr9 (41917462-41917274) | |
| 620-808, gnl|monDom2|scaffold_2 (115572610-115572383) | |
| 620-808, gnl|oryCun1|scaffold_176150 (83097-83324) | |
| 620-808, gnl|panTro1|chr9 (123037827-123038054) | |
| 620-808, gnl|rheMac2|chr14 (120040667-120040894) | |
| 620-808, gnl|rn3|chr8 (44983505-44983278) | |
| 620-808, gnl|tetNig1|chr16 (8230728-8230906) | |
| 620-808, gnl|xenTro1|scaffold_999 (131266-131065) |
| Aligned organism(s): 56 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 6-147, gnl|bosTau2|chr15 (18449585-18449726) | |
| 6-147, gnl|canFam2|chr5 (15526849-15526603) | |
| 6-147, gnl|danRer3|chr15 (24602038-24602240) | |
| 6-147, gnl|echTel1|scaffold_231022 (741-512) | |
| 6-147, gnl|fr1|chrUn (125062075-125061850) | |
| 6-147, gnl|galGal2|chr24 (3414407-3414156) | |
| 6-147, gnl|hg17|chr11 (120981292-120981541) | |
| 6-147, gnl|Hg17|chr11 (120981349-120981490) | |
| 6-147, gnl|loxAfr1|scaffold_298 (151962-152206) | |
| 6-147, gnl|mm7|chr9 (41925879-41925663) | |
| 6-147, gnl|Mm7|chr9 (41925823-41925682) | |
| 6-147, gnl|monDom2|scaffold_2 (115584191-115583952) | |
| 6-147, gnl|oryCun1|scaffold_204650 (5585-5798) | |
| 6-147, gnl|panTro1|chr9 (123028338-123028588) | |
| 6-147, gnl|rheMac2|chr14 (120030583-120030830) | |
| 6-147, gnl|rn3|chr8 (44991827-44991598) | |
| 6-147, gnl|tetNig1|chr16 (8229624-8229808) | |
| 6-147, gnl|xenTro1|scaffold_999 (143882-143643) | |
| 148-280, gnl|bosTau2|chr15 (18452234-18452367) | |
| 148-280, gnl|canFam2|chr5 (15524318-15524185) | |
| 148-280, gnl|danRer3|chr15 (24602312-24602432) | |
| 148-280, gnl|dasNov1|scaffold_8702 (18962-18829) | |
| 148-280, gnl|echTel1|scaffold_316145 (148612-148479) | |
| 148-280, gnl|fr1|chrUn (125061817-125061697) | |
| 148-280, gnl|galGal2|chr24 (3413953-3413813) | |
| 148-280, gnl|hg17|chr11 (120982759-120982892) | |
| 148-280, gnl|Hg17|chr11 (120982764-120982897) | |
| 148-280, gnl|loxAfr1|scaffold_298 (154347-154479) | |
| 148-280, gnl|mm7|chr9 (41923843-41923710) | |
| 148-280, gnl|Mm7|chr9 (41923836-41923709) | |
| 148-280, gnl|monDom2|scaffold_2 (115582906-115582778) | |
| 148-280, gnl|oryCun1|scaffold_204650 (9689-9822) | |
| 148-280, gnl|panTro1|chr9 (123029807-123029940) | |
| 148-280, gnl|rheMac2|chr14 (120032044-120032177) | |
| 148-280, gnl|rn3|chr8 (44989950-44989817) | |
| 148-280, gnl|tetNig1|chr16 (8229877-8229999) | |
| 148-280, gnl|xenTro1|scaffold_999 (142683-142550) | |
| 620-808, gnl|bosTau2|chr15 (18461854-18462042) | |
| 620-808, gnl|canFam2|chr5 (15516431-15516211) | |
| 620-808, gnl|danRer3|chr15 (24606312-24606525) | |
| 620-808, gnl|dasNov1|scaffold_8702 (10222-9997) | |
| 620-808, gnl|echTel1|scaffold_316145 (140751-140530) | |
| 620-808, gnl|fr1|chrUn (125060868-125060691) | |
| 620-808, gnl|galGal2|chr24 (3411035-3410833) | |
| 620-808, gnl|hg17|chr11 (120990776-120991003) | |
| 620-808, gnl|Hg17|chr11 (120990788-120990976) | |
| 620-808, gnl|loxAfr1|scaffold_298 (164925-165152) | |
| 620-808, gnl|mm7|chr9 (41917476-41917249) | |
| 620-808, gnl|Mm7|chr9 (41917462-41917274) | |
| 620-808, gnl|monDom2|scaffold_2 (115572610-115572383) | |
| 620-808, gnl|oryCun1|scaffold_176150 (83097-83324) | |
| 620-808, gnl|panTro1|chr9 (123037827-123038054) | |
| 620-808, gnl|rheMac2|chr14 (120040667-120040894) | |
| 620-808, gnl|rn3|chr8 (44983505-44983278) | |
| 620-808, gnl|tetNig1|chr16 (8230728-8230906) | |
| 620-808, gnl|xenTro1|scaffold_999 (131266-131065) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| med (0.116252) |