Non-Coding RNA Search

Ss1.1-rnco1935b_m19.5

Sequence:


               
               GCAGCTGCCCAGCCCTGGACGATGGGTGGGGCCGAGGGCCGGCGACCAGGAGCGCTTCTA
AACTAGACTCATCGCACCTCTTTTAAAATATCATATGGGGAAGGGAAGACAGGGTTAAGG
GACTTTATTTAAAAACAATTTTTTTTTCCTTACAACTTTAAAAGGGGTAGAATGAACCCC
AGGAAGCAATAGCCATAATCTGCTCCTAGCCGTGATGTTCTGGCTCTGTCCCTGACTCAG
GGAGCCCACTCTTTCTCCTCCTCCTCCTCTTCCTCCAAGACCACATCCCTGAGGCCTGCT
GGAGGAAGCTTTTCTCTTGGGAGGGAAGACTGGAAGCACAGAACCAAATAGCGCTGAGAA
CAACTGCCTGGACATGACATGCGCTGAGGCTGGCCTGTTGTCACCGATTCTTGGGTCACT
GACCAGGGACGTGCTACTCCCAGCCACAGAGAGGAGCACACCTCCTGTCAAGCATCGGAC
CCAGGAACTCCCTAGAACTCTGCCGACGGGCTCCACTGCTGAGTTGGGCCAGGCTGAGGA
CTCTTACCCCTGCCCTGTTGGTCTGCCTCACACCTGCCCCTTTGGACAACTCTCCCCTGT
TATGGGGCTGACTCANAGTGTTAGGCAGGGTCTCACACCTTTTAGATCACTAACCCCTGC
TCCCCCAGCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAGCTGCCCAGCCCTGGACGATGGGTGGGGCCGAGGGCCGGCGACCAGGAGCGCTTCTA
AACTAGACTCATCGCACCTCTTTTAAAATATCATATGGGGAAGGGAAGACAGGGTTAAGG
GACTTTATTTAAAAACAATTTTTTTTTCCTTACAACTTTAAAAGGGGTAGAATGAACCCC
AGGAAGCAATAGCCATAATCTGCTCCTAGCCGTGATGTTCTGGCTCTGTCCCTGACTCAG
GGAGCCCACTCTTTCTCCTCCTCCTCCTCTTCCTCCAAGACCACATCCCTGAGGCCTGCT
GGAGGAAGCTTTTCTCTTGGGAGGGAAGACTGGAAGCACAGAACCAAATAGCGCTGAGAA
CAACTGCCTGGACATGACATGCGCTGAGGCTGGCCTGTTGTCACCGATTCTTGGGTCACT
GACCAGGGACGTGCTACTCCCAGCCACAGAGAGGAGCACACCTCCTGTCAAGCATCGGAC
CCAGGAACTCCCTAGAACTCTGCCGACGGGCTCCACTGCTGAGTTGGGCCAGGCTGAGGA
CTCTTACCCCTGCCCTGTTGGTCTGCCTCACACCTGCCCCTTTGGACAACTCTCCCCTGT
TATGGGGCTGACTCANAGTGTTAGGCAGGGTCTCACACCTTTTAGATCACTAACCCCTGC
TCCCCCAGCCTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               152-264, - strand, RNAz p=0.943598

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               152-264, - strand, RNAz p=0.943598

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AK124781, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AK124781, -

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               1-308, gnl|bosTau2|chr11 (3507405-3507097)
               

               
               1-308, gnl|Hg17|chr2 (96897312-96897759)
               

               
               1-308, gnl|Mm7|chr1 (36748166-36748473)
               


               
               532-670, gnl|bosTau2|chr11 (3507043-3506901)
               

               
               532-670, gnl|canFam2|chr10 (48286213-48285426)
               

               
               532-670, gnl|echTel1|scaffold_226607 (1099-358)
               

               
               532-670, gnl|hg17|chr2 (96897898-96898687)
               

               
               532-670, gnl|mm7|chr1 (36748683-36749354)
               

               
               532-670, gnl|monDom2|scaffold_1 (154446653-154447421)
               

               
               532-670, gnl|oryCun1|scaffold_189423 (7684-6928)
               

               
               532-670, gnl|panTro1|chr12 (99918455-99919242)
               

               
               532-670, gnl|rheMac2|chr13 (97232630-97233418)
               

               
               532-670, gnl|rn3|chr9 (35450262-35451053)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-308, gnl|bosTau2|chr11 (3507405-3507097)
               

               
               1-308, gnl|Hg17|chr2 (96897312-96897759)
               

               
               1-308, gnl|Mm7|chr1 (36748166-36748473)
               


               
               532-670, gnl|bosTau2|chr11 (3507043-3506901)
               

               
               532-670, gnl|canFam2|chr10 (48286213-48285426)
               

               
               532-670, gnl|echTel1|scaffold_226607 (1099-358)
               

               
               532-670, gnl|hg17|chr2 (96897898-96898687)
               

               
               532-670, gnl|mm7|chr1 (36748683-36749354)
               

               
               532-670, gnl|monDom2|scaffold_1 (154446653-154447421)
               

               
               532-670, gnl|oryCun1|scaffold_189423 (7684-6928)
               

               
               532-670, gnl|panTro1|chr12 (99918455-99919242)
               

               
               532-670, gnl|rheMac2|chr13 (97232630-97233418)
               

               
               532-670, gnl|rn3|chr9 (35450262-35451053)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	1-308, gnl\|bosTau2\|chr11 (3507405-3507097)
	1-308, gnl\|Hg17\|chr2 (96897312-96897759)
	1-308, gnl\|Mm7\|chr1 (36748166-36748473)

	532-670, gnl\|bosTau2\|chr11 (3507043-3506901)
	532-670, gnl\|canFam2\|chr10 (48286213-48285426)
	532-670, gnl\|echTel1\|scaffold_226607 (1099-358)
	532-670, gnl\|hg17\|chr2 (96897898-96898687)
	532-670, gnl\|mm7\|chr1 (36748683-36749354)
	532-670, gnl\|monDom2\|scaffold_1 (154446653-154447421)
	532-670, gnl\|oryCun1\|scaffold_189423 (7684-6928)
	532-670, gnl\|panTro1\|chr12 (99918455-99919242)
	532-670, gnl\|rheMac2\|chr13 (97232630-97233418)
	532-670, gnl\|rn3\|chr9 (35450262-35451053)