Non-Coding RNA Search

Ss1.1-rnco1936b_d3.5

Sequence:


               
               GATAAGGACTAT------------GGTGTCGTGCTGCCGCATGTTCTTGATAAAATGAAT
CTTCTTAAAGTTCTTTGGTCTGGGGGAACCTGAGAGAGTTCGACATCTCCGTAGAGGGGC
ATTCTCCTCAATGTCTTCCAGGGTCTCCAAGGACGATCTCTGGGAGATGAGACGACGTCG
GGACCTCTGCAGCTGTTCAAAGGCGCTGGTGCTGCCTCCCTGGCCCGGCTGCTCCAGAGA
GCAATAGTTCTGCGAAGTCTGCCTGGAGAAGGCGATGGGCAGGATTCCCTGAGTGAACGA
GTTGAGGCGGCCTCGACTGCCGCTCCCACTCCCGGGAGTCCCGGAGCCCAAGAAGGCGGC
CGCCGGCACCTGCACGCTGGTAAAGGCATCGTCCTCCTCCAACTCCTCCTGCCCGGCGCC
CCCGGGCCCGTTGGGCAGCTGCGGCTGAACGCAGGCGGCGAGAAGCGCGGGCCGGGGCAG
CTGCAGTTGCTCTCCCGACGCCCGGCCCGCGCCCAGGGAGCTCGCGAACCCTCGGGACGC
CCCAGGGCCGAGCGCGGTCGCGTAGCCGCCAGGGACCAGGGGCGGCAGCGGCGACGGCGG
CGGGAGGTAGGGGCCGGATCCAGCTGCCAATGCCGCCGCTGTGCCCGCCAATGCAAGCGC
GCTGCAGCCGCCCCGCTCGGCGGCGGCGAGCAGACT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATAAGGACTAT------------GGTGTCGTGCTGCCGCATGTTCTTGATAAAATGAAT
CTTCTTAAAGTTCTTTGGTCTGGGGGAACCTGAGAGAGTTCGACATCTCCGTAGAGGGGC
ATTCTCCTCAATGTCTTCCAGGGTCTCCAAGGACGATCTCTGGGAGATGAGACGACGTCG
GGACCTCTGCAGCTGTTCAAAGGCGCTGGTGCTGCCTCCCTGGCCCGGCTGCTCCAGAGA
GCAATAGTTCTGCGAAGTCTGCCTGGAGAAGGCGATGGGCAGGATTCCCTGAGTGAACGA
GTTGAGGCGGCCTCGACTGCCGCTCCCACTCCCGGGAGTCCCGGAGCCCAAGAAGGCGGC
CGCCGGCACCTGCACGCTGGTAAAGGCATCGTCCTCCTCCAACTCCTCCTGCCCGGCGCC
CCCGGGCCCGTTGGGCAGCTGCGGCTGAACGCAGGCGGCGAGAAGCGCGGGCCGGGGCAG
CTGCAGTTGCTCTCCCGACGCCCGGCCCGCGCCCAGGGAGCTCGCGAACCCTCGGGACGC
CCCAGGGCCGAGCGCGGTCGCGTAGCCGCCAGGGACCAGGGGCGGCAGCGGCGACGGCGG
CGGGAGGTAGGGGCCGGATCCAGCTGCCAATGCCGCCGCTGTGCCCGCCAATGCAAGCGC
GCTGCAGCCGCCCCGCTCGGCGGCGGCGAGCAGACT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               167-436, gnl|bosTau2|chr10 (45940050-45940319)
               

               
               167-436, gnl|Hg17|chr18 (18970569-18970301)
               

               
               167-436, gnl|Mm7|chr18 (12190471-12190202)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               167-436, gnl|bosTau2|chr10 (45940050-45940319)
               

               
               167-436, gnl|Hg17|chr18 (18970569-18970301)
               

               
               167-436, gnl|Mm7|chr18 (12190471-12190202)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	167-436, gnl\|bosTau2\|chr10 (45940050-45940319)
	167-436, gnl\|Hg17\|chr18 (18970569-18970301)
	167-436, gnl\|Mm7\|chr18 (12190471-12190202)