Non-Coding RNA Search

Ss1.1-rnco1936b_f19.5

Sequence:


               
               GCTCAATTTCAACTCCAAGGTCAACGAAGGTCTCTTGCCGTCTCGCCAACTCCCCGGAGC
ATTGCGTGCCCGAGCCATGGCCCAGGCGCTGTACCACGAGGAATTCGCCCGGGCAGGCAA
GCAGGCGGGGCTGCAGGTCTGGAGGATCGAGAAGCTGGAGCTGGTGCCGGTGCCCGAGAG
CGCTTACGGCGACTTCTACGTCGGGGATGCCTACCTGGTGCTACACACGACCCAGGCCAG
CCGGGGCTTCGTCTACCGCCTGCACTTCTGGCTCGGAAAGGAGTGTACCCAGGATGAAAG
CACAGCGGCTGCCATCTTCACTATTCAGATGGATGATTATTTGGGCGGCAAACCAGTGCA
AAATAGAGAACTTCAAGGCTATGAATCTACGGATTTTGTTGGCTACTTCAAAGGAGGTCT
AAAATACAAGGCTGGAGGTGTGGCATCTGGATTCAACCATGTTCTCACAAATGACTTGAG
CGCCCAGAGGCTCCTGCATGTGAAGGGTCGGAGGGTGGTCAGGGCCACGGAAGTTCCCCT
AAGCTGGGACAGTTTCAACAAGGGTGACTGTTTCATCATTGACCTTGGCTCTGAAATTTA
CCAGTGGTTTGGATCCTCATGCAACAAATATGAACGTCTGAAGGCCAGCCAGGTTGCCAC
TGGCATTCGGGACAATGAAAGGAATGGAAGATCTCAACTAATTGTGGTGGAAGAAGGGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTCAATTTCAACTCCAAGGTCAACGAAGGTCTCTTGCCGTCTCGCCAACTCCCCGGAGC
ATTGCGTGCCCGAGCCATGGCCCAGGCGCTGTACCACGAGGAATTCGCCCGGGCAGGCAA
GCAGGCGGGGCTGCAGGTCTGGAGGATCGAGAAGCTGGAGCTGGTGCCGGTGCCCGAGAG
CGCTTACGGCGACTTCTACGTCGGGGATGCCTACCTGGTGCTACACACGACCCAGGCCAG
CCGGGGCTTCGTCTACCGCCTGCACTTCTGGCTCGGAAAGGAGTGTACCCAGGATGAAAG
CACAGCGGCTGCCATCTTCACTATTCAGATGGATGATTATTTGGGCGGCAAACCAGTGCA
AAATAGAGAACTTCAAGGCTATGAATCTACGGATTTTGTTGGCTACTTCAAAGGAGGTCT
AAAATACAAGGCTGGAGGTGTGGCATCTGGATTCAACCATGTTCTCACAAATGACTTGAG
CGCCCAGAGGCTCCTGCATGTGAAGGGTCGGAGGGTGGTCAGGGCCACGGAAGTTCCCCT
AAGCTGGGACAGTTTCAACAAGGGTGACTGTTTCATCATTGACCTTGGCTCTGAAATTTA
CCAGTGGTTTGGATCCTCATGCAACAAATATGAACGTCTGAAGGCCAGCCAGGTTGCCAC
TGGCATTCGGGACAATGAAAGGAATGGAAGATCTCAACTAATTGTGGTGGAAGAAGGGAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q5ZIV9_CHICK

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5ZIV9_CHICK

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               44-281, gnl|bosTau2|chr4 (5759904-5759667)
               

               
               44-281, gnl|Hg17|chr7 (12383624-12383857)
               

               
               44-281, gnl|Mm7|chr12 (37967670-37967427)
               


               
               429-596, gnl|bosTau2|chr4 (5744928-5744761)
               

               
               429-596, gnl|Hg17|chr7 (12393923-12394090)
               

               
               429-596, gnl|Mm7|chr12 (37958253-37958086)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               44-281, gnl|bosTau2|chr4 (5759904-5759667)
               

               
               44-281, gnl|Hg17|chr7 (12383624-12383857)
               

               
               44-281, gnl|Mm7|chr12 (37967670-37967427)
               


               
               429-596, gnl|bosTau2|chr4 (5744928-5744761)
               

               
               429-596, gnl|Hg17|chr7 (12393923-12394090)
               

               
               429-596, gnl|Mm7|chr12 (37958253-37958086)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               spl (0.143184)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               spl (0.143184)

	44-281, gnl\|bosTau2\|chr4 (5759904-5759667)
	44-281, gnl\|Hg17\|chr7 (12383624-12383857)
	44-281, gnl\|Mm7\|chr12 (37967670-37967427)

	429-596, gnl\|bosTau2\|chr4 (5744928-5744761)
	429-596, gnl\|Hg17\|chr7 (12393923-12394090)
	429-596, gnl\|Mm7\|chr12 (37958253-37958086)