Non-Coding RNA Search

Ss1.1-rnco1936b_h9.5

Sequence:


               
               GTTTTCTTCTTGAAAGAGTAAGGTTGACCTCTTACATTTTTCAAGTTAATTTATGTAAAA
ATTATATTGATTTTGATGTAATTTTTCTCTTTGTTGAATCCAATTGAAGACCAATAATAT
AAGTTATTCATGATATTAGTAACTTTGCAACGTGATTCAGTAAATAAATCTAATTGGTGG
ATGCCAAATACTGCTGTGAATCTCTTTGTACAGTGTCCCTGAATGAATTTTTGGAAATAA
ATATTTGTGTATCTCAATTTGTGCAGAAATTAAGTGAAATCACAGTACTTACAGGCTAAA
AACCTCCATAGATCTCTGAATAGCAGGGTATTGTTTCACATGTGCTATTTGAAGTAGTTA
TTTGACTGCTTCTCTTGTATGTAGTTTATTTTATAAAGATATAACATGTGTATTTAAAAA
GATTTGCCCCTGTTAACAAGCATAACAGTTAAAGGAGATGGTTTCAATGTTCGTTTAGAA
ATTGAGATAGGGACAGAAAGATTAAAAAATAATGTATATTTTGAATAAACATGATATTAG
TATATACATGTAGCTATTTCAGAGACAATATACTTACAGTGATTTTAGCCACTACCAAAT
CTTGATTTAGTTTGATAGTGTATATAATTTTGTTTTGAAGGATGGGAAATTGTGGTAAAG
ATTGTTTATGCTCTTTATGAAGTAATTCTAAAGTTGGCATCAATTTCAGTAATCTGCTGT
AAAATACATAGATATGTGTATGGTCAGTTTTTTATTGTGGCTTCATGAATAAATGTAAAA
TCGAAATACATTTATTTGCTTTGTAGAATATTTTTCAAACTCTTGGTATCTTTCACAATA
GTCTCTTTTTGAATAGTAATACAAAATAATCAAGTTCATACGAATAAATGCATTTTTATT
TCTTACTTGTTTAGGGAGTACTGCAAATGTTTGTCATTTAACAATTTTCAGTTATCTGTT
ACAGTACTTTAACTGACTATATAGATTTTTCCTATGCCACATATGTGCCACTTTTAAATA
GTAAATGACTTTTTTTTTGCTATATTTGTAAAGCAGTTGTATTAGGAAGAACTTTGTAAA
TAAATACTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTCTTCTTGAAAGAGTAAGGTTGACCTCTTACATTTTTCAAGTTAATTTATGTAAAA
ATTATATTGATTTTGATGTAATTTTTCTCTTTGTTGAATCCAATTGAAGACCAATAATAT
AAGTTATTCATGATATTAGTAACTTTGCAACGTGATTCAGTAAATAAATCTAATTGGTGG
ATGCCAAATACTGCTGTGAATCTCTTTGTACAGTGTCCCTGAATGAATTTTTGGAAATAA
ATATTTGTGTATCTCAATTTGTGCAGAAATTAAGTGAAATCACAGTACTTACAGGCTAAA
AACCTCCATAGATCTCTGAATAGCAGGGTATTGTTTCACATGTGCTATTTGAAGTAGTTA
TTTGACTGCTTCTCTTGTATGTAGTTTATTTTATAAAGATATAACATGTGTATTTAAAAA
GATTTGCCCCTGTTAACAAGCATAACAGTTAAAGGAGATGGTTTCAATGTTCGTTTAGAA
ATTGAGATAGGGACAGAAAGATTAAAAAATAATGTATATTTTGAATAAACATGATATTAG
TATATACATGTAGCTATTTCAGAGACAATATACTTACAGTGATTTTAGCCACTACCAAAT
CTTGATTTAGTTTGATAGTGTATATAATTTTGTTTTGAAGGATGGGAAATTGTGGTAAAG
ATTGTTTATGCTCTTTATGAAGTAATTCTAAAGTTGGCATCAATTTCAGTAATCTGCTGT
AAAATACATAGATATGTGTATGGTCAGTTTTTTATTGTGGCTTCATGAATAAATGTAAAA
TCGAAATACATTTATTTGCTTTGTAGAATATTTTTCAAACTCTTGGTATCTTTCACAATA
GTCTCTTTTTGAATAGTAATACAAAATAATCAAGTTCATACGAATAAATGCATTTTTATT
TCTTACTTGTTTAGGGAGTACTGCAAATGTTTGTCATTTAACAATTTTCAGTTATCTGTT
ACAGTACTTTAACTGACTATATAGATTTTTCCTATGCCACATATGTGCCACTTTTAAATA
GTAAATGACTTTTTTTTTGCTATATTTGTAAAGCAGTTGTATTAGGAAGAACTTTGTAAA
TAAATACTTAAA

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               900-1092, gnl|bosTau2|chr29 (2202886-2202696)
               

               
               900-1092, gnl|Hg17|chr3 (174021770-174021955)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               900-1092, gnl|bosTau2|chr29 (2202886-2202696)
               

               
               900-1092, gnl|Hg17|chr3 (174021770-174021955)

Expressed library(ies): 7 entry(ies)

More info

Expressed library(ies): 7 entry(ies)

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               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               bfe (0.149858)
               

               
               lin (0.145603)
               

               
               cov (0.132153)
               

               
               kid (0.129735)
               

               
               thg (0.126791)
               

               
               nbm (0.0993246)

	900-1092, gnl\|bosTau2\|chr29 (2202886-2202696)
	900-1092, gnl\|Hg17\|chr3 (174021770-174021955)

	nco (0.161734)
	bfe (0.149858)
	lin (0.145603)
	cov (0.132153)
	kid (0.129735)
	thg (0.126791)
	nbm (0.0993246)