Non-Coding RNA Search

Ss1.1-rnco1936b_j17.5

Sequence:


               
               TCCACAATTGACCAGAACCAGCGTTTGAACTGCAAGAGCTTCTCAGCATTTTCTCCTACA
AATGAATACAAATTCAATAAATACACACTATATATCAGTTATATTTTTATTAATATTGCT
TCTTATAAAAGCAGATATAAAATTAAAACGTGATGGGGAGCTAACCTTAATATGGGAAAT
TAGGAACGTGTATAATGTGAAATCTCTATAGTTCATTAGTCTATCCTAATGATTAAGACA
AGGAAAATGAACCACCAGCCTCAACAATCACTGACTTTAATCTCATCTGTAAATCAAGAT
TCTTCTCCTGCCCTTAAACTAGTGCTTCTCAAAGTTTAATGAGTTTACAAGCCACTTGGG
GGAATCTTTTTAAAATGCAGATTCTCAGTCACTAGGTCTGGGGGAAGAAAGGGGAAAGAA
GCCAGAGATTCTGCATTTCTGAGAAGCTTCCAGATGATGCTGATGCTGATCTGAGGATCC
TACTTGGAATATCTACATTAGATATATGTGTTTCCCCTTCTAGGTTTTAGGATTGTAAAT
AAGCCAAATTCTTACCTCACAAGTTTTAACTGAAAACTATGTTTAAAAGTAGAACAATAA
CTATTACACAATGTTCTATATGTTGCCAAGCATGAAGGTAAAGCAAGTGAATTTATCCAA
ATTTAATTTACTATAATTTGGCTGAAGCTGTTTGCAAAACAAGAAAAATAAAGGGGAAAA
AACTAGAACCTTCATGTATACAATAATCTTGGACTAGAGGTATATAGTCCTCTGATGAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCCACAATTGACCAGAACCAGCGTTTGAACTGCAAGAGCTTCTCAGCATTTTCTCCTACA
AATGAATACAAATTCAATAAATACACACTATATATCAGTTATATTTTTATTAATATTGCT
TCTTATAAAAGCAGATATAAAATTAAAACGTGATGGGGAGCTAACCTTAATATGGGAAAT
TAGGAACGTGTATAATGTGAAATCTCTATAGTTCATTAGTCTATCCTAATGATTAAGACA
AGGAAAATGAACCACCAGCCTCAACAATCACTGACTTTAATCTCATCTGTAAATCAAGAT
TCTTCTCCTGCCCTTAAACTAGTGCTTCTCAAAGTTTAATGAGTTTACAAGCCACTTGGG
GGAATCTTTTTAAAATGCAGATTCTCAGTCACTAGGTCTGGGGGAAGAAAGGGGAAAGAA
GCCAGAGATTCTGCATTTCTGAGAAGCTTCCAGATGATGCTGATGCTGATCTGAGGATCC
TACTTGGAATATCTACATTAGATATATGTGTTTCCCCTTCTAGGTTTTAGGATTGTAAAT
AAGCCAAATTCTTACCTCACAAGTTTTAACTGAAAACTATGTTTAAAAGTAGAACAATAA
CTATTACACAATGTTCTATATGTTGCCAAGCATGAAGGTAAAGCAAGTGAATTTATCCAA
ATTTAATTTACTATAATTTGGCTGAAGCTGTTTGCAAAACAAGAAAAATAAAGGGGAAAA
AACTAGAACCTTCATGTATACAATAATCTTGGACTAGAGGTATATAGTCCTCTGATGAAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               630-747, + strand, RNAz p=0.919751

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               630-747, + strand, RNAz p=0.919751

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               1-780, gnl|bosTau2|chr14 (14067416-14066668)
               

               
               1-780, gnl|Hg17|chr8 (103339067-103339771)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-780, gnl|bosTau2|chr14 (14067416-14066668)
               

               
               1-780, gnl|Hg17|chr8 (103339067-103339771)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nco (0.161734)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               med (0.116252)

	1-780, gnl\|bosTau2\|chr14 (14067416-14066668)
	1-780, gnl\|Hg17\|chr8 (103339067-103339771)