Ss1.1-rnco1936b_n3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTCCTATTTGGAGAATTATATTGAAGTAGAGACTGGATATTTGAAAAGCAGAAGTGCT ATGATCCTACAGCGCTATTATGATTCAAAAAACCATCAAAAGAGATCCATTGGCACAGGA GGTATTCAAGATTTGAAAGAGAGAATTAGACAACGTACCAACTTACCACTGGGGCCAAGT ATCGATACTCATGGGGAGACTTTCCTATCTCAAGAAGTGGTGGTTAATCTTTTACAAGAA ACCAAACAAGCCTTTGAAAGATGTCATAGGCTGTCTGATCCTTCTGATTTACCAAGGAAT GCCTTTAGAATTTTTACTATTCTTGTGGAATTTTTATGTATTGAGCATATTGATTATGCC TTGGAAACAGGACTTGCTGGAATCCCTTCTTCGGATTCTAAGAATGCAAATCTCTATTTT TTGGATGTTGTGCACCAGGCCAATACTATTTTTCATCTTTTTGACAAGCAGTTTAATGAT CACCTTATGCCACTAATAAGCTCTTCTCCTAAGTTATCTGAATGCCTTCAGAAGAAAAAA GAAATAATTGAACAAATGGAGATGAAATTGGATACTGGCATTGATAGGACATTAAATTGT ATGATTGGACAGATGAAGCATATCTTGGCTGCAGAACAAAAGAAAACAGATTTTAAGCCA GAAGATGAAAACAATGTTTTGATTCAGTATACTAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTCCTATTTGGAGAATTATATTGAAGTAGAGACTGGATATTTGAAAAGCAGAAGTGCT ATGATCCTACAGCGCTATTATGATTCAAAAAACCATCAAAAGAGATCCATTGGCACAGGA GGTATTCAAGATTTGAAAGAGAGAATTAGACAACGTACCAACTTACCACTGGGGCCAAGT ATCGATACTCATGGGGAGACTTTCCTATCTCAAGAAGTGGTGGTTAATCTTTTACAAGAA ACCAAACAAGCCTTTGAAAGATGTCATAGGCTGTCTGATCCTTCTGATTTACCAAGGAAT GCCTTTAGAATTTTTACTATTCTTGTGGAATTTTTATGTATTGAGCATATTGATTATGCC TTGGAAACAGGACTTGCTGGAATCCCTTCTTCGGATTCTAAGAATGCAAATCTCTATTTT TTGGATGTTGTGCACCAGGCCAATACTATTTTTCATCTTTTTGACAAGCAGTTTAATGAT CACCTTATGCCACTAATAAGCTCTTCTCCTAAGTTATCTGAATGCCTTCAGAAGAAAAAA GAAATAATTGAACAAATGGAGATGAAATTGGATACTGGCATTGATAGGACATTAAATTGT ATGATTGGACAGATGAAGCATATCTTGGCTGCAGAACAAAAGAAAACAGATTTTAAGCCA GAAGATGAAAACAATGTTTTGATTCAGTATACTAAT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | More info |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
| 122-270, gnl|bosTau2|chr10 (46486814-46486962) | |
| 122-270, gnl|canFam2|chr8 (35839108-35838994) | |
| 122-270, gnl|danRer3|chr17 (46903999-46904113) | |
| 122-270, gnl|dasNov1|scaffold_73156 (5803-5924) | |
| 122-270, gnl|echTel1|scaffold_221479 (7994-8108) | |
| 122-270, gnl|fr1|chrUn (35019819-35019933) | |
| 122-270, gnl|galGal2|chr5 (52337573-52337687) | |
| 122-270, gnl|Hg17|chr14 (56766353-56766205) | |
| 122-270, gnl|hg17|chr4 (63512300-63512414) | |
| 122-270, gnl|loxAfr1|scaffold_19652 (4803-4689) | |
| 122-270, gnl|mm7|chr14 (44364514-44364402) | |
| 122-270, gnl|Mm7|chr14 (44364515-44364367) | |
| 122-270, gnl|monDom2|scaffold_8 (69180466-69180352) | |
| 122-270, gnl|oryCun1|scaffold_69702 (2308-2194) | |
| 122-270, gnl|panTro1|chr3 (83097302-83097188) | |
| 122-270, gnl|rheMac2|chr7 (120241318-120241206) | |
| 122-270, gnl|rn3|chr15 (25041132-25041020) | |
| 122-270, gnl|tetNig1|chr10 (5010511-5010625) | |
| 122-270, gnl|xenTro1|scaffold_33 (1631661-1631773) | |
| 379-500, gnl|bosTau2|chr10 (46501269-46501390) | |
| 379-500, gnl|canFam2|chr8 (35831723-35831871) | |
| 379-500, gnl|canFam2|chr8 (35831870-35831751) | |
| 379-500, gnl|danRer3|chr17 (46906239-46906091) | |
| 379-500, gnl|danRer3|chr17 (46906094-46906211) | |
| 379-500, gnl|dasNov1|scaffold_38292 (4333-4185) | |
| 379-500, gnl|dasNov1|scaffold_73156 (6054-6171) | |
| 379-500, gnl|fr1|chrUn (35020955-35020801) | |
| 379-500, gnl|fr1|chrUn (35020804-35020921) | |
| 379-500, gnl|galGal2|chr5 (52340435-52340292) | |
| 379-500, gnl|galGal2|chr5 (52340293-52340412) | |
| 379-500, gnl|hg17|chr14 (56755764-56755916) | |
| 379-500, gnl|Hg17|chr14 (56755914-56755793) | |
| 379-500, gnl|hg17|chr4 (63512557-63512676) | |
| 379-500, gnl|mm7|chr14 (44350469-44350621) | |
| 379-500, gnl|mm7|chr14 (44350618-44350501) | |
| 379-500, gnl|Mm7|chr14 (44350619-44350498) | |
| 379-500, gnl|monDom2|scaffold_8 (69177377-69177541) | |
| 379-500, gnl|monDom2|scaffold_8 (69177540-69177421) | |
| 379-500, gnl|oryCun1|scaffold_203382 (43901-43753) | |
| 379-500, gnl|oryCun1|scaffold_69702 (2051-1932) | |
| 379-500, gnl|panTro1|chr15 (56208998-56209150) | |
| 379-500, gnl|panTro1|chr3 (83097046-83096927) | |
| 379-500, gnl|rheMac2|chr7 (120231046-120231198) | |
| 379-500, gnl|rheMac2|chr7 (120231195-120231078) | |
| 379-500, gnl|rn3|chr15 (25029489-25029641) | |
| 379-500, gnl|rn3|chr15 (25029638-25029521) | |
| 379-500, gnl|tetNig1|chr10 (5011543-5011414) | |
| 379-500, gnl|tetNig1|chr10 (5011417-5011534) | |
| 379-500, gnl|xenTro1|scaffold_33 (1634488-1634337) | |
| 379-500, gnl|xenTro1|scaffold_33 (1634338-1634457) | |
| 585-696, gnl|bosTau2|chr10 (46505650-46505761) | |
| 585-696, gnl|canFam2|chr8 (35827681-35827595) | |
| 585-696, gnl|danRer3|chr17 (46906472-46906558) | |
| 585-696, gnl|dasNov1|scaffold_270734 (3634-3548) | |
| 585-696, gnl|fr1|chrUn (35021162-35021248) | |
| 585-696, gnl|galGal2|chr5 (52342997-52343083) | |
| 585-696, gnl|Hg17|chr14 (56746535-56746424) | |
| 585-696, gnl|hg17|chr4 (63512764-63512850) | |
| 585-696, gnl|loxAfr1|scaffold_30536 (1873-1957) | |
| 585-696, gnl|mm7|chr14 (44347402-44347319) | |
| 585-696, gnl|Mm7|chr14 (44347405-44347294) | |
| 585-696, gnl|oryCun1|scaffold_69702 (1844-1756) | |
| 585-696, gnl|panTro1|chr3 (83096839-83096753) | |
| 585-696, gnl|rheMac2|chr7 (120221706-120221623) | |
| 585-696, gnl|rn3|chr15 (25026406-25026323) | |
| 585-696, gnl|tetNig1|chr10 (5011780-5011866) | |
| 585-696, gnl|xenTro1|scaffold_33 (1637864-1637950) |
| Aligned organism(s): 67 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 122-270, gnl|bosTau2|chr10 (46486814-46486962) | |
| 122-270, gnl|canFam2|chr8 (35839108-35838994) | |
| 122-270, gnl|danRer3|chr17 (46903999-46904113) | |
| 122-270, gnl|dasNov1|scaffold_73156 (5803-5924) | |
| 122-270, gnl|echTel1|scaffold_221479 (7994-8108) | |
| 122-270, gnl|fr1|chrUn (35019819-35019933) | |
| 122-270, gnl|galGal2|chr5 (52337573-52337687) | |
| 122-270, gnl|Hg17|chr14 (56766353-56766205) | |
| 122-270, gnl|hg17|chr4 (63512300-63512414) | |
| 122-270, gnl|loxAfr1|scaffold_19652 (4803-4689) | |
| 122-270, gnl|mm7|chr14 (44364514-44364402) | |
| 122-270, gnl|Mm7|chr14 (44364515-44364367) | |
| 122-270, gnl|monDom2|scaffold_8 (69180466-69180352) | |
| 122-270, gnl|oryCun1|scaffold_69702 (2308-2194) | |
| 122-270, gnl|panTro1|chr3 (83097302-83097188) | |
| 122-270, gnl|rheMac2|chr7 (120241318-120241206) | |
| 122-270, gnl|rn3|chr15 (25041132-25041020) | |
| 122-270, gnl|tetNig1|chr10 (5010511-5010625) | |
| 122-270, gnl|xenTro1|scaffold_33 (1631661-1631773) | |
| 379-500, gnl|bosTau2|chr10 (46501269-46501390) | |
| 379-500, gnl|canFam2|chr8 (35831723-35831871) | |
| 379-500, gnl|canFam2|chr8 (35831870-35831751) | |
| 379-500, gnl|danRer3|chr17 (46906239-46906091) | |
| 379-500, gnl|danRer3|chr17 (46906094-46906211) | |
| 379-500, gnl|dasNov1|scaffold_38292 (4333-4185) | |
| 379-500, gnl|dasNov1|scaffold_73156 (6054-6171) | |
| 379-500, gnl|fr1|chrUn (35020955-35020801) | |
| 379-500, gnl|fr1|chrUn (35020804-35020921) | |
| 379-500, gnl|galGal2|chr5 (52340435-52340292) | |
| 379-500, gnl|galGal2|chr5 (52340293-52340412) | |
| 379-500, gnl|hg17|chr14 (56755764-56755916) | |
| 379-500, gnl|Hg17|chr14 (56755914-56755793) | |
| 379-500, gnl|hg17|chr4 (63512557-63512676) | |
| 379-500, gnl|mm7|chr14 (44350469-44350621) | |
| 379-500, gnl|mm7|chr14 (44350618-44350501) | |
| 379-500, gnl|Mm7|chr14 (44350619-44350498) | |
| 379-500, gnl|monDom2|scaffold_8 (69177377-69177541) | |
| 379-500, gnl|monDom2|scaffold_8 (69177540-69177421) | |
| 379-500, gnl|oryCun1|scaffold_203382 (43901-43753) | |
| 379-500, gnl|oryCun1|scaffold_69702 (2051-1932) | |
| 379-500, gnl|panTro1|chr15 (56208998-56209150) | |
| 379-500, gnl|panTro1|chr3 (83097046-83096927) | |
| 379-500, gnl|rheMac2|chr7 (120231046-120231198) | |
| 379-500, gnl|rheMac2|chr7 (120231195-120231078) | |
| 379-500, gnl|rn3|chr15 (25029489-25029641) | |
| 379-500, gnl|rn3|chr15 (25029638-25029521) | |
| 379-500, gnl|tetNig1|chr10 (5011543-5011414) | |
| 379-500, gnl|tetNig1|chr10 (5011417-5011534) | |
| 379-500, gnl|xenTro1|scaffold_33 (1634488-1634337) | |
| 379-500, gnl|xenTro1|scaffold_33 (1634338-1634457) | |
| 585-696, gnl|bosTau2|chr10 (46505650-46505761) | |
| 585-696, gnl|canFam2|chr8 (35827681-35827595) | |
| 585-696, gnl|danRer3|chr17 (46906472-46906558) | |
| 585-696, gnl|dasNov1|scaffold_270734 (3634-3548) | |
| 585-696, gnl|fr1|chrUn (35021162-35021248) | |
| 585-696, gnl|galGal2|chr5 (52342997-52343083) | |
| 585-696, gnl|Hg17|chr14 (56746535-56746424) | |
| 585-696, gnl|hg17|chr4 (63512764-63512850) | |
| 585-696, gnl|loxAfr1|scaffold_30536 (1873-1957) | |
| 585-696, gnl|mm7|chr14 (44347402-44347319) | |
| 585-696, gnl|Mm7|chr14 (44347405-44347294) | |
| 585-696, gnl|oryCun1|scaffold_69702 (1844-1756) | |
| 585-696, gnl|panTro1|chr3 (83096839-83096753) | |
| 585-696, gnl|rheMac2|chr7 (120221706-120221623) | |
| 585-696, gnl|rn3|chr15 (25026406-25026323) | |
| 585-696, gnl|tetNig1|chr10 (5011780-5011866) | |
| 585-696, gnl|xenTro1|scaffold_33 (1637864-1637950) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nco (0.161734) | |
| mga (0.160205) | |
| spl (0.143184) | |
| nbm (0.0993246) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| mga (0.160205) | |
| spl (0.143184) | |
| nbm (0.0993246) |