Non-Coding RNA Search

Ss1.1-rnco1936b_p23.5

Sequence:


               
               ACTATTAAAAATGAACCCTGTACAGCATCATGGGGGTGGGAGCGGGTGGCACTCCCCACT
GGGAAGGACAGATAGATGGAAGGCTTGGGGGAGCTGGAGGCTACAGTACCGTGTGCTCAG
AATCAGAGGGGAGGGAAATGAGAGAGGCCGGTCCTGCCTAAGTTGCAGAACCAGGCCAAG
GGCAGAGAGGAGGGGGCAGAGGGGGTTTCTCCTTCCAAACAGTCCCCCATGGCTTGGAGA
AAAATGGCCTTGCATCTGTCTGTTGTATTGCTCAGGGAATAGCTTAGGGGGAGGGGGGAG
GCTTGGCAAGGTGAGGGCAAAGAAAAAATGACTTTGGTGCCAGGGTGGGTGAGGGCTGCC
CAGAAAGGGAATGTGGGTATACACCGTTATTGCTTCCTCCTAGGGCAAAGAGTGGGGGAG
CAGGAGGATGCTGGGGAAGTGGGGGAGCCCAGGATGGGGGCTCTGGGCCTGGACCCACCC
CACCCAAAGAGCAGGTGGGAGCCACTGCAACCCCCTCTCCTATGGCCGTGGGAATCATTA
AGGCAGAAACAAGAGGAGAAGCAGCTGGAAGCAGGGGTGCGGCTCTAAACCGTCCAGCCC
CACAGGGAAAAAATTCAAACGGAAACCCAAGTGGAAGGGAAAAGGGGTGGCAAGTGGAGG
GGGGAGGGGGAATCATACCTCAGACCCCAGGTTAGTGATATGAATGTCCCTCCAACTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTATTAAAAATGAACCCTGTACAGCATCATGGGGGTGGGAGCGGGTGGCACTCCCCACT
GGGAAGGACAGATAGATGGAAGGCTTGGGGGAGCTGGAGGCTACAGTACCGTGTGCTCAG
AATCAGAGGGGAGGGAAATGAGAGAGGCCGGTCCTGCCTAAGTTGCAGAACCAGGCCAAG
GGCAGAGAGGAGGGGGCAGAGGGGGTTTCTCCTTCCAAACAGTCCCCCATGGCTTGGAGA
AAAATGGCCTTGCATCTGTCTGTTGTATTGCTCAGGGAATAGCTTAGGGGGAGGGGGGAG
GCTTGGCAAGGTGAGGGCAAAGAAAAAATGACTTTGGTGCCAGGGTGGGTGAGGGCTGCC
CAGAAAGGGAATGTGGGTATACACCGTTATTGCTTCCTCCTAGGGCAAAGAGTGGGGGAG
CAGGAGGATGCTGGGGAAGTGGGGGAGCCCAGGATGGGGGCTCTGGGCCTGGACCCACCC
CACCCAAAGAGCAGGTGGGAGCCACTGCAACCCCCTCTCCTATGGCCGTGGGAATCATTA
AGGCAGAAACAAGAGGAGAAGCAGCTGGAAGCAGGGGTGCGGCTCTAAACCGTCCAGCCC
CACAGGGAAAAAATTCAAACGGAAACCCAAGTGGAAGGGAAAAGGGGTGGCAAGTGGAGG
GGGGAGGGGGAATCATACCTCAGACCCCAGGTTAGTGATATGAATGTCCCTCCAACTCCC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               228-511, + strand, RNAz p=0.999975

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               228-511, + strand, RNAz p=0.999975

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-720, gnl|bosTau2|chr7 (10845921-10845188)
               

               
               7-720, gnl|Hg17|chr19 (10440774-10440007)
               

               
               7-720, gnl|Mm7|chr9 (21089266-21088576)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-720, gnl|bosTau2|chr7 (10845921-10845188)
               

               
               7-720, gnl|Hg17|chr19 (10440774-10440007)
               

               
               7-720, gnl|Mm7|chr9 (21089266-21088576)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nco (0.161734)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)

	7-720, gnl\|bosTau2\|chr7 (10845921-10845188)
	7-720, gnl\|Hg17\|chr19 (10440774-10440007)
	7-720, gnl\|Mm7\|chr9 (21089266-21088576)