Non-Coding RNA Search

Ss1.1-rnco1939b_c16.5

Sequence:


               
               GGACCTCTCCAGGAGAGTCATCTCTTAGCAAATTCAAACACTAAATAAGGAAAACACCAA
TAGCCAAACATTTGATTTAATATACAGACCTCTGGATTACTTACTATATTTAGAGTCACA
GCTTTTTCTTTGAGTTTTGGCATATGGAGGGTAGGATAAGATGAGAGGAAATTGATGAAA
AGGAAAGCTGTATTATCTGGAATTTTTAAATTCTGTAAGAGTCAGAGTTTGGAAGTATTT
AAAGTGGTAACTACTGGAATTAGATCATAGATGTGAAAATGAAACTGCTCTCTCATGCAC
AGACCAGTGCTTTGGGTTTTTTTTTAAAAAATATTCTGTCATTGACTATACATTTTTACT
CAGGCTTCCTACTGACATAGATTTCCTTTGACCTCTCACATTTTTATAGATTATAACAAC
ACCCCTCATCTCCAGCCAATTTCAAAGAAACTACTTTGAAAGAAAATAGACCAGCGCAGT
TCTGCAATAACAGTTTTAAGATGGGTGTGAAGTTTGGGGAGAAGAGATGAGGGTTCTTTT
TTTCAATGTACTGTATTGGGATGCTGAGTAACTATTAAGCCAGTGTTCAATATAGAGCTA
GATATATATATATAAATATGTATATATTTATTATTTTCATATAATTTTCCAGACAGAGAT
CGGAATTGAACTGTCAATGTGAAATAAAGAACTCTCCTTGTACTTGAGTAATAACTACAA
TTTCAGTCCACATCTGCTTTGGGGTTTATCAGGACTCTGCTCTCCTGAGCACTAGAATGA
AGAGTCATGTTTGATTGTTTCACATCTGTGTATCAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGACCTCTCCAGGAGAGTCATCTCTTAGCAAATTCAAACACTAAATAAGGAAAACACCAA
TAGCCAAACATTTGATTTAATATACAGACCTCTGGATTACTTACTATATTTAGAGTCACA
GCTTTTTCTTTGAGTTTTGGCATATGGAGGGTAGGATAAGATGAGAGGAAATTGATGAAA
AGGAAAGCTGTATTATCTGGAATTTTTAAATTCTGTAAGAGTCAGAGTTTGGAAGTATTT
AAAGTGGTAACTACTGGAATTAGATCATAGATGTGAAAATGAAACTGCTCTCTCATGCAC
AGACCAGTGCTTTGGGTTTTTTTTTAAAAAATATTCTGTCATTGACTATACATTTTTACT
CAGGCTTCCTACTGACATAGATTTCCTTTGACCTCTCACATTTTTATAGATTATAACAAC
ACCCCTCATCTCCAGCCAATTTCAAAGAAACTACTTTGAAAGAAAATAGACCAGCGCAGT
TCTGCAATAACAGTTTTAAGATGGGTGTGAAGTTTGGGGAGAAGAGATGAGGGTTCTTTT
TTTCAATGTACTGTATTGGGATGCTGAGTAACTATTAAGCCAGTGTTCAATATAGAGCTA
GATATATATATATAAATATGTATATATTTATTATTTTCATATAATTTTCCAGACAGAGAT
CGGAATTGAACTGTCAATGTGAAATAAAGAACTCTCCTTGTACTTGAGTAATAACTACAA
TTTCAGTCCACATCTGCTTTGGGGTTTATCAGGACTCTGCTCTCCTGAGCACTAGAATGA
AGAGTCATGTTTGATTGTTTCACATCTGTGTATCAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               541-660, + strand, RNAz p=0.756714

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               541-660, + strand, RNAz p=0.756714

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               479-582, + strand, RNAmicro p=0.985157

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               479-582, + strand, RNAmicro p=0.985157

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_004170, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_004170, +

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-416, gnl|bosTau2|chr8 (18690990-18690562)
               

               
               1-416, gnl|Hg17|chr9 (4575592-4576005)
               

               
               1-416, gnl|Mm7|chr19 (28611774-28612174)
               


               
               427-816, gnl|bosTau2|chr8 (18690494-18690110)
               

               
               427-816, gnl|Hg17|chr9 (4576059-4576430)
               

               
               427-816, gnl|Mm7|chr19 (28612227-28612595)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-416, gnl|bosTau2|chr8 (18690990-18690562)
               

               
               1-416, gnl|Hg17|chr9 (4575592-4576005)
               

               
               1-416, gnl|Mm7|chr19 (28611774-28612174)
               


               
               427-816, gnl|bosTau2|chr8 (18690494-18690110)
               

               
               427-816, gnl|Hg17|chr9 (4576059-4576430)
               

               
               427-816, gnl|Mm7|chr19 (28612227-28612595)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               pgl (0.118483)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               cki (0.165235)
               

               
               nco (0.161734)
               

               
               pgl (0.118483)

	1-416, gnl\|bosTau2\|chr8 (18690990-18690562)
	1-416, gnl\|Hg17\|chr9 (4575592-4576005)
	1-416, gnl\|Mm7\|chr19 (28611774-28612174)

	427-816, gnl\|bosTau2\|chr8 (18690494-18690110)
	427-816, gnl\|Hg17\|chr9 (4576059-4576430)
	427-816, gnl\|Mm7\|chr19 (28612227-28612595)