Ss1.1-rnco1939b_i2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGCGGCGCGCTGCGGCTCTCGCGTGAGCGGCGGCGGCCAGAGCGTCTGGCAGGGCTGCGA GGCGGGCCGCGCTGGGCCGGGCCGGGCGGCGGCGCGATGTGGATCGGCCGCAGCTCCTTC ACCAGCCTGGTCGTGGGCGTGTTCGTGGTGTACGTGGTGCACACCTGCTGGGTCATGTAC GGCATCGTCTACACCCGCCCGTGCTCCGGCGACGGAAACTGCATCCAGCCCTACCTGGCA CGGAGGCCCAAGCTGCAGCTCAGTGTGTACACCACCACGCGGTCCAGCCTGGGCGCCGAG AACCACGTGGATCTGGTCTTGAACGTGGAGGACTTTGACGTGGAGTCCAAATTCGAAAGG ACCGTCAACGTCTCTGTCCCCAAGAAAACCAGGAACAATGGGACGCTGTACGCCTACGTC TTCCTCCACCACGCGGGCGTCCTGCCCTGGCGCGATGGCAAGCAGGTGCACCTGGTGAGC CCGCTCACCACGTACATGGTCCCCAAACCGGAGGAGGTCAATCTGCTCACGGGCGAGTCT GCCACGCAGCAGGTCGAGGCCGAGAAGAGGCCGTCGAATGCGCTGGACGAGCCCGTCTCT CACTGGAGGCCGAGGCTGACCCTGAACGTGATGGTGGATGACTTCGTCTTCGACGGGGCC GCCCTGCCCGCCGACGTGCACCGCTACATGAAGATGGTCCAGCTGGGGAAGACGGTGCAC TACCTGCCCATCCTGTTCATCGACCAGCTCAGCAACCGCGTGAAGGAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGCGGCGCGCTGCGGCTCTCGCGTGAGCGGCGGCGGCCAGAGCGTCTGGCAGGGCTGCGA GGCGGGCCGCGCTGGGCCGGGCCGGGCGGCGGCGCGATGTGGATCGGCCGCAGCTCCTTC ACCAGCCTGGTCGTGGGCGTGTTCGTGGTGTACGTGGTGCACACCTGCTGGGTCATGTAC GGCATCGTCTACACCCGCCCGTGCTCCGGCGACGGAAACTGCATCCAGCCCTACCTGGCA CGGAGGCCCAAGCTGCAGCTCAGTGTGTACACCACCACGCGGTCCAGCCTGGGCGCCGAG AACCACGTGGATCTGGTCTTGAACGTGGAGGACTTTGACGTGGAGTCCAAATTCGAAAGG ACCGTCAACGTCTCTGTCCCCAAGAAAACCAGGAACAATGGGACGCTGTACGCCTACGTC TTCCTCCACCACGCGGGCGTCCTGCCCTGGCGCGATGGCAAGCAGGTGCACCTGGTGAGC CCGCTCACCACGTACATGGTCCCCAAACCGGAGGAGGTCAATCTGCTCACGGGCGAGTCT GCCACGCAGCAGGTCGAGGCCGAGAAGAGGCCGTCGAATGCGCTGGACGAGCCCGTCTCT CACTGGAGGCCGAGGCTGACCCTGAACGTGATGGTGGATGACTTCGTCTTCGACGGGGCC GCCCTGCCCGCCGACGTGCACCGCTACATGAAGATGGTCCAGCTGGGGAAGACGGTGCAC TACCTGCCCATCCTGTTCATCGACCAGCTCAGCAACCGCGTGAAGGAC |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 358-511, - strand, RNAz p=0.898826 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 358-511, - strand, RNAz p=0.898826 |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 358-533, gnl|bosTau2|chr20 (42626520-42626695) | |
| 358-533, gnl|canFam2|chr34 (14270758-14270530) | |
| 358-533, gnl|danRer3|chr20 (20281231-20281012) | |
| 358-533, gnl|dasNov1|scaffold_60630 (5356-5598) | |
| 358-533, gnl|echTel1|scaffold_218084 (2800-2978) | |
| 358-533, gnl|fr1|chrUn (280365536-280365325) | |
| 358-533, gnl|galGal2|chr2 (85736060-85736284) | |
| 358-533, gnl|hg17|chr5 (1394767-1395011) | |
| 358-533, gnl|Hg17|chr5 (1394977-1394802) | |
| 358-533, gnl|mm7|chr13 (70538506-70538264) | |
| 358-533, gnl|Mm7|chr13 (70538294-70538469) | |
| 358-533, gnl|monDom2|scaffold_4 (15777316-15777554) | |
| 358-533, gnl|panTro1|chr4 (1440508-1440752) | |
| 358-533, gnl|rheMac2|chr6 (1019438-1019682) | |
| 358-533, gnl|rn3|chr1 (30491239-30491466) | |
| 358-533, gnl|tetNig1|chr21 (2644201-2644003) | |
| 358-533, gnl|xenTro1|scaffold_26 (1554781-1554557) | |
| 546-696, gnl|bosTau2|chr20 (42627880-42628030) | |
| 546-696, gnl|canFam2|chr34 (14272228-14272070) | |
| 546-696, gnl|danRer3|chr20 (20281449-20281305) | |
| 546-696, gnl|dasNov1|scaffold_60630 (3777-3931) | |
| 546-696, gnl|echTel1|scaffold_218084 (2662-2790) | |
| 546-696, gnl|fr1|chrUn (280365819-280365674) | |
| 546-696, gnl|galGal2|chr2 (85733980-85734130) | |
| 546-696, gnl|hg17|chr5 (1391970-1392128) | |
| 546-696, gnl|Hg17|chr5 (1392124-1391974) | |
| 546-696, gnl|loxAfr1|scaffold_106837 (32836-32673) | |
| 546-696, gnl|mm7|chr13 (70539948-70539791) | |
| 546-696, gnl|Mm7|chr13 (70539793-70539943) | |
| 546-696, gnl|monDom2|scaffold_4 (15774579-15774737) | |
| 546-696, gnl|oryCun1|scaffold_89048 (4300-4455) | |
| 546-696, gnl|panTro1|chr4 (1438534-1438692) | |
| 546-696, gnl|rheMac2|chr6 (1017542-1017700) | |
| 546-696, gnl|rn3|chr1 (30489811-30489968) | |
| 546-696, gnl|tetNig1|chr21 (2644469-2644355) | |
| 546-696, gnl|xenTro1|scaffold_26 (1556727-1556571) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 358-533, gnl|bosTau2|chr20 (42626520-42626695) | |
| 358-533, gnl|canFam2|chr34 (14270758-14270530) | |
| 358-533, gnl|danRer3|chr20 (20281231-20281012) | |
| 358-533, gnl|dasNov1|scaffold_60630 (5356-5598) | |
| 358-533, gnl|echTel1|scaffold_218084 (2800-2978) | |
| 358-533, gnl|fr1|chrUn (280365536-280365325) | |
| 358-533, gnl|galGal2|chr2 (85736060-85736284) | |
| 358-533, gnl|hg17|chr5 (1394767-1395011) | |
| 358-533, gnl|Hg17|chr5 (1394977-1394802) | |
| 358-533, gnl|mm7|chr13 (70538506-70538264) | |
| 358-533, gnl|Mm7|chr13 (70538294-70538469) | |
| 358-533, gnl|monDom2|scaffold_4 (15777316-15777554) | |
| 358-533, gnl|panTro1|chr4 (1440508-1440752) | |
| 358-533, gnl|rheMac2|chr6 (1019438-1019682) | |
| 358-533, gnl|rn3|chr1 (30491239-30491466) | |
| 358-533, gnl|tetNig1|chr21 (2644201-2644003) | |
| 358-533, gnl|xenTro1|scaffold_26 (1554781-1554557) | |
| 546-696, gnl|bosTau2|chr20 (42627880-42628030) | |
| 546-696, gnl|canFam2|chr34 (14272228-14272070) | |
| 546-696, gnl|danRer3|chr20 (20281449-20281305) | |
| 546-696, gnl|dasNov1|scaffold_60630 (3777-3931) | |
| 546-696, gnl|echTel1|scaffold_218084 (2662-2790) | |
| 546-696, gnl|fr1|chrUn (280365819-280365674) | |
| 546-696, gnl|galGal2|chr2 (85733980-85734130) | |
| 546-696, gnl|hg17|chr5 (1391970-1392128) | |
| 546-696, gnl|Hg17|chr5 (1392124-1391974) | |
| 546-696, gnl|loxAfr1|scaffold_106837 (32836-32673) | |
| 546-696, gnl|mm7|chr13 (70539948-70539791) | |
| 546-696, gnl|Mm7|chr13 (70539793-70539943) | |
| 546-696, gnl|monDom2|scaffold_4 (15774579-15774737) | |
| 546-696, gnl|oryCun1|scaffold_89048 (4300-4455) | |
| 546-696, gnl|panTro1|chr4 (1438534-1438692) | |
| 546-696, gnl|rheMac2|chr6 (1017542-1017700) | |
| 546-696, gnl|rn3|chr1 (30489811-30489968) | |
| 546-696, gnl|tetNig1|chr21 (2644469-2644355) | |
| 546-696, gnl|xenTro1|scaffold_26 (1556727-1556571) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nco (0.161734) | |
| hyp (0.142837) | |
| jca (0.11396) |