Non-Coding RNA Search

Ss1.1-rnco1940b_f6.5

Sequence:


               
               GGCGCAGCAGGAAGCGGCGGTGATCGCGGCCTGAGTTCCCGGCGGCGGCCCCGGCTCCTT
TCCCGCTGCCGCCATGCTCGACTTCTTTACCATTTTCTCCAAAGGCGGGCTCGTGCTCTG
GTGCTTCCAGGGCGTGAGCGACTCATGCACCGGGCCGGTTAACGCGTTGATTCGTTCCGT
GCTGCTGCAGGAAAGGGGAGGTAACAACTCCTTCACCCATGAGGCACTCACACTCAAGTA
TAAACTGGACAACCAGTTTGAGCTGGTGTTTGTGGTTGGTTTTCAGAAGATCCTAACACT
GACCTATGTAGACAAGTTGATAGATGATGTGCACCGGCTGTTTCGGGACAAGTACCGCAC
TGAGATTCAACAGCAAAGTGCTTTAAGTCTATTGAATGGCACTTTTGATTTCCAAAATGA
CTTTCTGCGGCTCCTTCGCGAAGCAGAGGAGAGCAGTAAGATCCGTGCTCCTACTACCAT
GAAGAAATTTGAAGATTCTGAAAAGTCCAAAAAACCTGTGAGGTCCATGATTGAGACACG
GGGTGAAAAGCCCAAGGAAAAAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCGCAGCAGGAAGCGGCGGTGATCGCGGCCTGAGTTCCCGGCGGCGGCCCCGGCTCCTT
TCCCGCTGCCGCCATGCTCGACTTCTTTACCATTTTCTCCAAAGGCGGGCTCGTGCTCTG
GTGCTTCCAGGGCGTGAGCGACTCATGCACCGGGCCGGTTAACGCGTTGATTCGTTCCGT
GCTGCTGCAGGAAAGGGGAGGTAACAACTCCTTCACCCATGAGGCACTCACACTCAAGTA
TAAACTGGACAACCAGTTTGAGCTGGTGTTTGTGGTTGGTTTTCAGAAGATCCTAACACT
GACCTATGTAGACAAGTTGATAGATGATGTGCACCGGCTGTTTCGGGACAAGTACCGCAC
TGAGATTCAACAGCAAAGTGCTTTAAGTCTATTGAATGGCACTTTTGATTTCCAAAATGA
CTTTCTGCGGCTCCTTCGCGAAGCAGAGGAGAGCAGTAAGATCCGTGCTCCTACTACCAT
GAAGAAATTTGAAGATTCTGAAAAGTCCAAAAAACCTGTGAGGTCCATGATTGAGACACG
GGGTGAAAAGCCCAAGGAAAAAGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|12841114|dbj|BAB25084.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|12841114|dbj|BAB25084.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-191, gnl|bosTau2|chr29 (21568234-21568424)
               

               
               1-191, gnl|Hg17|chr11 (125643982-125643792)
               

               
               1-191, gnl|Mm7|chr9 (35106009-35106208)
               


               
               274-438, gnl|bosTau2|chr29 (21569432-21569596)
               

               
               274-438, gnl|Hg17|chr11 (125642818-125642654)
               

               
               274-438, gnl|Mm7|chr9 (35107149-35107313)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-191, gnl|bosTau2|chr29 (21568234-21568424)
               

               
               1-191, gnl|Hg17|chr11 (125643982-125643792)
               

               
               1-191, gnl|Mm7|chr9 (35106009-35106208)
               


               
               274-438, gnl|bosTau2|chr29 (21569432-21569596)
               

               
               274-438, gnl|Hg17|chr11 (125642818-125642654)
               

               
               274-438, gnl|Mm7|chr9 (35107149-35107313)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)

	1-191, gnl\|bosTau2\|chr29 (21568234-21568424)
	1-191, gnl\|Hg17\|chr11 (125643982-125643792)
	1-191, gnl\|Mm7\|chr9 (35106009-35106208)

	274-438, gnl\|bosTau2\|chr29 (21569432-21569596)
	274-438, gnl\|Hg17\|chr11 (125642818-125642654)
	274-438, gnl\|Mm7\|chr9 (35107149-35107313)