Non-Coding RNA Search

Ss1.1-rnco1940b_o19.5

Sequence:


               
               GCTGCTCATCTTCTTCTCAGTGGTGAACGTATCTGTGGGGCTGCTGGGGGCCTTCGCCTA
CCTCCTCACCTACATGGCTTCCTTCAACTTGGTGTACCTTTTTACTATCCGCATCCACGG
CTCCCTGGGCTTCCTAGGTGGTGTCTTGGTGGCACTCAAGCAAACCATGGGGGACTGTGT
GGTGCTCCGAGTGCCCCAGGTTCGTGTCAGTGTGGTGCCCATGCTGCTGTTGGGGCTGCT
GTTGCTGCTGCGGCTGGCCACACTACTCCAGAGCCCAGCGCTGGCCTCCTATGGCTTTGG
GCTGCTCTCCAGTTGGGTGTATCTTCGCTTCTACCAGCGCCATAGCCGAGGCCGAGGAGA
CATGGCCGACCACTTTGCTTTCGCCACCTTCTTCCCTGAGATCCTGCAGCCTGTGGTGGG
GCTGTTGGCAAACTTGGTACATGGCCTCCTGGTGAAGGTAAAGATATGCCAGAAGACAGT
GAAGCGCTATGATGTGGGCGCACCATCTTCCATCACCATCAGCCTCCCAGGCACAGACCC
TCAAGATGCAGAGCGGAGAAGGCAACTGGCTCTGAAGGCCCTCAATGAGCGGCTGAAGAG
AGTGGAAGATCAGTCCGTCTGGCCCAGCATGGACGACGATGAAGAGGAGGCTGGGGTCAA
GGTGGACAGCCCCCTGCCCTTAGACAAGGCCCCCATATTTCCAGGGAAGGGGGCTGTCCC
AGAATCTAGCCTGATCACCTTTGAGGCAGCTCCCCCGAAGCAGTAACTCCAGACCACCTT
GAGTGTAGCCTCCTCTCCCAAGCCCCCCTTGACACCCTCTCAGCTACTCCAGGGCACTGA
CTGCTCTGAGGAGAGGAAAGAAGGCCTGATCGGGGTTGCACAGCCTTCTGCTATTTCTCG
CCAACACTACCCAGGACTCCTGCTACCTGGTTCCAAGTCCAGACAACCACTATGCCAGGC
ACAGGGCCTCTGAAGCATCAGCCAGCCTGGGCCATCTGAGGTAAGACTGTACCTCTGCAA
GCAGCCCCAAGCAAGTGGCTGTAGGGACACTTGTGCCATGGGTCCTGGGCCAACCCCCAC
ACCTGATACTGGTTGCGAAAGCCCTGAGCCAAGGCAAGAATTTGCCAAAAATGTTCTGGG
GGTCCAGCCAGTGCAGGAGCCGGCACAGGGCTGCACGTCCCCGCCCACCCCCAGAAAGAC
TATGTTCACGTCAAGATTTCTGATTCTTTCTGCTGTGGCCATGGCTGCTTCTGGGCCAGA
ACAGTCACAGCTCCCAGGTATTTTCTACAGGACCACTTGAGTGGGCAGCCAAGCCCAGCC
TCGCAGTATCAATAAAGCAGTTCTTTGAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGCTCATCTTCTTCTCAGTGGTGAACGTATCTGTGGGGCTGCTGGGGGCCTTCGCCTA
CCTCCTCACCTACATGGCTTCCTTCAACTTGGTGTACCTTTTTACTATCCGCATCCACGG
CTCCCTGGGCTTCCTAGGTGGTGTCTTGGTGGCACTCAAGCAAACCATGGGGGACTGTGT
GGTGCTCCGAGTGCCCCAGGTTCGTGTCAGTGTGGTGCCCATGCTGCTGTTGGGGCTGCT
GTTGCTGCTGCGGCTGGCCACACTACTCCAGAGCCCAGCGCTGGCCTCCTATGGCTTTGG
GCTGCTCTCCAGTTGGGTGTATCTTCGCTTCTACCAGCGCCATAGCCGAGGCCGAGGAGA
CATGGCCGACCACTTTGCTTTCGCCACCTTCTTCCCTGAGATCCTGCAGCCTGTGGTGGG
GCTGTTGGCAAACTTGGTACATGGCCTCCTGGTGAAGGTAAAGATATGCCAGAAGACAGT
GAAGCGCTATGATGTGGGCGCACCATCTTCCATCACCATCAGCCTCCCAGGCACAGACCC
TCAAGATGCAGAGCGGAGAAGGCAACTGGCTCTGAAGGCCCTCAATGAGCGGCTGAAGAG
AGTGGAAGATCAGTCCGTCTGGCCCAGCATGGACGACGATGAAGAGGAGGCTGGGGTCAA
GGTGGACAGCCCCCTGCCCTTAGACAAGGCCCCCATATTTCCAGGGAAGGGGGCTGTCCC
AGAATCTAGCCTGATCACCTTTGAGGCAGCTCCCCCGAAGCAGTAACTCCAGACCACCTT
GAGTGTAGCCTCCTCTCCCAAGCCCCCCTTGACACCCTCTCAGCTACTCCAGGGCACTGA
CTGCTCTGAGGAGAGGAAAGAAGGCCTGATCGGGGTTGCACAGCCTTCTGCTATTTCTCG
CCAACACTACCCAGGACTCCTGCTACCTGGTTCCAAGTCCAGACAACCACTATGCCAGGC
ACAGGGCCTCTGAAGCATCAGCCAGCCTGGGCCATCTGAGGTAAGACTGTACCTCTGCAA
GCAGCCCCAAGCAAGTGGCTGTAGGGACACTTGTGCCATGGGTCCTGGGCCAACCCCCAC
ACCTGATACTGGTTGCGAAAGCCCTGAGCCAAGGCAAGAATTTGCCAAAAATGTTCTGGG
GGTCCAGCCAGTGCAGGAGCCGGCACAGGGCTGCACGTCCCCGCCCACCCCCAGAAAGAC
TATGTTCACGTCAAGATTTCTGATTCTTTCTGCTGTGGCCATGGCTGCTTCTGGGCCAGA
ACAGTCACAGCTCCCAGGTATTTTCTACAGGACCACTTGAGTGGGCAGCCAAGCCCAGCC
TCGCAGTATCAATAAAGCAGTTCTTTGAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|14318604|gb|AAH09099.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|14318604|gb|AAH09099.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, + strand, RNAz p=0.56681

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, + strand, RNAz p=0.56681

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-562, gnl|bosTau2|chr22 (38633553-38632992)
               

               
               1-562, gnl|Hg17|chr3 (50371208-50370647)
               

               
               1-562, gnl|Mm7|chr9 (107264217-107264778)
               


               
               1178-1356, gnl|bosTau2|chr15 (31427922-31428090)
               

               
               1178-1356, gnl|Hg17|chr3 (50367358-50367191)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-562, gnl|bosTau2|chr22 (38633553-38632992)
               

               
               1-562, gnl|Hg17|chr3 (50371208-50370647)
               

               
               1-562, gnl|Mm7|chr9 (107264217-107264778)
               


               
               1178-1356, gnl|bosTau2|chr15 (31427922-31428090)
               

               
               1178-1356, gnl|Hg17|chr3 (50367358-50367191)

Expressed library(ies): 10 entry(ies)

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Expressed library(ies): 10 entry(ies)

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               fhi (0.339155)
               

               
               cga (0.279096)
               

               
               clu (0.239292)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               nbm (0.0993246)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               cga (0.279096)
               

               
               clu (0.239292)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               ute (0.132784)
               

               
               nbm (0.0993246)

	1-562, gnl\|bosTau2\|chr22 (38633553-38632992)
	1-562, gnl\|Hg17\|chr3 (50371208-50370647)
	1-562, gnl\|Mm7\|chr9 (107264217-107264778)

	1178-1356, gnl\|bosTau2\|chr15 (31427922-31428090)
	1178-1356, gnl\|Hg17\|chr3 (50367358-50367191)

	fhi (0.339155)
	cga (0.279096)
	clu (0.239292)
	fbs (0.175346)
	eye (0.170503)
	nco (0.161734)
	pla (0.133672)
	nmm (0.132802)
	ute (0.132784)
	nbm (0.0993246)