Non-Coding RNA Search

Ss1.1-rnep07c_i10.5

Sequence:


               
               CCATGGCGCGCCACAGCCTCCCGCTCTCAATGGGCCTGGCCCTGCTCGCGTTCTGCCTGC
TGGCGCTGCCCCGCGACGCCCGGGGCCGGCCCGGGGAGCGCAGGGTGGGAGAGCCGCAGG
ACCTGTCGCCCAGCGACCCGCAGGTGCAGCACGCGGCGCAGGTGGCGGTGGCCAACTACA
ACATGGGCAGCAACAGCCTCTACTACTTCCGCGACACCACCATCCTCCGGGCGCAGAGCC
AGCTGGTGGCTGGCATCAAGTACTACCTGACCTTGGAGATGGGGAGCACAGCCTGCCGGA
AGAATGCCGTGGCTGGAGACCGCATAGACCTTGCCACCTGCCCTCTGGCTGTGGGAGCAC
AGCAGGAGAAGCTGCGCTGTGACTTTGAGATCCTTGTGGTTCCCTGGCAGAACTCCTCCC
AACTTCTAAAGCAGGACTGTGTGTCCCTGTAGCCGACCCCTGTGGGCAAGGGGTGGAGGG
GGAGAGCGGGTGGGTCTGGGCAGGAGTGGGTGCATCTGTGGAGGGCACTTCAGATCCCTG
TGATATCTGTGGCAATAAACTGCTAGCACTGCTTCTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCATGGCGCGCCACAGCCTCCCGCTCTCAATGGGCCTGGCCCTGCTCGCGTTCTGCCTGC
TGGCGCTGCCCCGCGACGCCCGGGGCCGGCCCGGGGAGCGCAGGGTGGGAGAGCCGCAGG
ACCTGTCGCCCAGCGACCCGCAGGTGCAGCACGCGGCGCAGGTGGCGGTGGCCAACTACA
ACATGGGCAGCAACAGCCTCTACTACTTCCGCGACACCACCATCCTCCGGGCGCAGAGCC
AGCTGGTGGCTGGCATCAAGTACTACCTGACCTTGGAGATGGGGAGCACAGCCTGCCGGA
AGAATGCCGTGGCTGGAGACCGCATAGACCTTGCCACCTGCCCTCTGGCTGTGGGAGCAC
AGCAGGAGAAGCTGCGCTGTGACTTTGAGATCCTTGTGGTTCCCTGGCAGAACTCCTCCC
AACTTCTAAAGCAGGACTGTGTGTCCCTGTAGCCGACCCCTGTGGGCAAGGGGTGGAGGG
GGAGAGCGGGTGGGTCTGGGCAGGAGTGGGTGCATCTGTGGAGGGCACTTCAGATCCCTG
TGATATCTGTGGCAATAAACTGCTAGCACTGCTTCTAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5DPW9_BOVIN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5DPW9_BOVIN

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-254, gnl|bosTau2|chr29 (38842706-38842960)
               

               
               1-254, gnl|Hg17|chr11 (65536090-65536342)
               

               
               1-254, gnl|Mm7|chr19 (5244142-5243876)
               


               
               367-574, gnl|bosTau2|chr29 (38844073-38844279)
               

               
               367-574, gnl|Hg17|chr11 (65537362-65537546)
               

               
               367-574, gnl|Mm7|chr19 (5242857-5242669)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-254, gnl|bosTau2|chr29 (38842706-38842960)
               

               
               1-254, gnl|Hg17|chr11 (65536090-65536342)
               

               
               1-254, gnl|Mm7|chr19 (5244142-5243876)
               


               
               367-574, gnl|bosTau2|chr29 (38844073-38844279)
               

               
               367-574, gnl|Hg17|chr11 (65537362-65537546)
               

               
               367-574, gnl|Mm7|chr19 (5242857-5242669)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               amn (2.50627)
               

               
               nep (1.65532)
               

               
               ute (1.59341)
               

               
               cut (1.01954)
               

               
               cki (0.660939)
               

               
               eep (0.490256)
               

               
               eru (0.480192)
               

               
               cst (0.420109)
               

               
               pgl (0.236967)
               

               
               cmu (0.186393)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (2.50627)
               

               
               nep (1.65532)
               

               
               ute (1.59341)
               

               
               cut (1.01954)
               

               
               cki (0.660939)
               

               
               eep (0.490256)
               

               
               eru (0.480192)
               

               
               cst (0.420109)
               

               
               pgl (0.236967)
               

               
               cmu (0.186393)
               

               
               hyp (0.142837)
               

               
               csk (0.140746)
               

               
               nmm (0.132802)
               

               
               cov (0.132153)

	1-254, gnl\|bosTau2\|chr29 (38842706-38842960)
	1-254, gnl\|Hg17\|chr11 (65536090-65536342)
	1-254, gnl\|Mm7\|chr19 (5244142-5243876)

	367-574, gnl\|bosTau2\|chr29 (38844073-38844279)
	367-574, gnl\|Hg17\|chr11 (65537362-65537546)
	367-574, gnl\|Mm7\|chr19 (5242857-5242669)

	amn (2.50627)
	nep (1.65532)
	ute (1.59341)
	cut (1.01954)
	cki (0.660939)
	eep (0.490256)
	eru (0.480192)
	cst (0.420109)
	pgl (0.236967)
	cmu (0.186393)
	hyp (0.142837)
	csk (0.140746)
	nmm (0.132802)
	cov (0.132153)