Ss1.1-rnep07c_i19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTAGTGAGACATCCTTTTAGAACCTGCGTGGTTTTGCCTCAGCAGCCGCGGCGACTTG TAACTAGTTAACTAATTCAACAAACGGACCCCTGTGTGTGTCAGAAACTGCAAGGAGTTG CTAGCCCAGTGGGGCAGGCGGACTGGAAGACCAGGGAAGTCCAGGCCCAGGGCAGTGTGA TACTGCCCTCTGTAACCATGAAACTCCAGGTGTCCATGTTGCTGGTGGCCTGGTTTGGTG TCCTGAACTGTGTGCAGGCTGAATTCTTCACTTCTATTGGGCACATGACAGACCTGATTT ATGCAGAGAAGGACCTGGTACAGTCCCTAAAGGAATACATCCTGGTGGAGGAAGCCAAGC TCTCCAAGATTAAGAGCTGGGCCAGCAAAATGGAAGCCCTGACCAGCCAGTCAGCTGCTG ACCCTGAGGGCTACCTGGCCCACCCTGTGAATGCCTATAAACTGGTGAAGCGGCTGAACA CAGACTGGCCTGTGCTGGAGGACCTTGTCCTGCAGGACTCGGCTGCAGGTTTTATTGCCA ACCTGTCAGTGCAGCGACAGTTCTTCCCCACTGATGAGGATGAGGCGGGAGCCGCCAAGG CCTTGATGAGACTTCAGGACACGTACAAACTGGACCCAGACACGATTTCCAGAGGGGATC TTCCAGGAACCAAGTACCAGGCAATGCTGAGTGTGGACGACTGCTTTGGCATGGGCCGCT CAGCTTACAATGAAGGGGACTATTACCACACGGTGCTGTGGATGGAGCAGGTGCTGAAGC AGCTCGATGCTGGGGAGGAGGCTACCACATCCAAGGCCCAGGTGTTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTAGTGAGACATCCTTTTAGAACCTGCGTGGTTTTGCCTCAGCAGCCGCGGCGACTTG TAACTAGTTAACTAATTCAACAAACGGACCCCTGTGTGTGTCAGAAACTGCAAGGAGTTG CTAGCCCAGTGGGGCAGGCGGACTGGAAGACCAGGGAAGTCCAGGCCCAGGGCAGTGTGA TACTGCCCTCTGTAACCATGAAACTCCAGGTGTCCATGTTGCTGGTGGCCTGGTTTGGTG TCCTGAACTGTGTGCAGGCTGAATTCTTCACTTCTATTGGGCACATGACAGACCTGATTT ATGCAGAGAAGGACCTGGTACAGTCCCTAAAGGAATACATCCTGGTGGAGGAAGCCAAGC TCTCCAAGATTAAGAGCTGGGCCAGCAAAATGGAAGCCCTGACCAGCCAGTCAGCTGCTG ACCCTGAGGGCTACCTGGCCCACCCTGTGAATGCCTATAAACTGGTGAAGCGGCTGAACA CAGACTGGCCTGTGCTGGAGGACCTTGTCCTGCAGGACTCGGCTGCAGGTTTTATTGCCA ACCTGTCAGTGCAGCGACAGTTCTTCCCCACTGATGAGGATGAGGCGGGAGCCGCCAAGG CCTTGATGAGACTTCAGGACACGTACAAACTGGACCCAGACACGATTTCCAGAGGGGATC TTCCAGGAACCAAGTACCAGGCAATGCTGAGTGTGGACGACTGCTTTGGCATGGGCCGCT CAGCTTACAATGAAGGGGACTATTACCACACGGTGCTGTGGATGGAGCAGGTGCTGAAGC AGCTCGATGCTGGGGAGGAGGCTACCACATCCAAGGCCCAGGTGTTGG |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 33-179, gnl|bosTau2|chr7 (16065693-16065547) | |
| 33-179, gnl|canFam2|chr11 (23552250-23552690) | |
| 33-179, gnl|hg17|chr5 (131590545-131591007) | |
| 33-179, gnl|Hg17|chr5 (131590833-131590678) | |
| 33-179, gnl|mm7|chr11 (54058528-54058098) | |
| 33-179, gnl|Mm7|chr11 (54058262-54058404) | |
| 33-179, gnl|oryCun1|scaffold_181949 (43631-43993) | |
| 33-179, gnl|panTro1|chr4 (137923627-137924089) | |
| 33-179, gnl|rheMac2|chr6 (128640689-128641151) | |
| 33-179, gnl|rn3|chr10 (39536591-39536207) | |
| 279-379, gnl|bosTau2|chr7 (16056446-16056346) | |
| 279-379, gnl|canFam2|chr11 (23543713-23543865) | |
| 279-379, gnl|danRer3|chr21 (39763183-39763061) | |
| 279-379, gnl|dasNov1|scaffold_5935 (1882-1728) | |
| 279-379, gnl|echTel1|scaffold_170502 (6799-6647) | |
| 279-379, gnl|fr1|chrUn (144476091-144476241) | |
| 279-379, gnl|galGal2|chr13 (15770679-15770814) | |
| 279-379, gnl|hg17|chr5 (131581331-131581479) | |
| 279-379, gnl|Hg17|chr5 (131581441-131581341) | |
| 279-379, gnl|loxAfr1|scaffold_20954 (18873-19009) | |
| 279-379, gnl|mm7|chr11 (54067861-54067709) | |
| 279-379, gnl|Mm7|chr11 (54067742-54067842) | |
| 279-379, gnl|monDom2|scaffold_6 (93927224-93927086) | |
| 279-379, gnl|oryCun1|scaffold_181949 (30843-30995) | |
| 279-379, gnl|panTro1|chr4 (137914389-137914537) | |
| 279-379, gnl|rheMac2|chr6 (128631491-128631639) | |
| 279-379, gnl|rn3|chr10 (39545343-39545192) | |
| 279-379, gnl|tetNig1|chr7 (8461584-8461468) | |
| 279-379, gnl|xenTro1|scaffold_1111 (260897-261017) | |
| 527-667, gnl|bosTau2|chr28 (22360646-22360506) | |
| 527-667, gnl|canFam2|chr4 (26869057-26869207) | |
| 527-667, gnl|danRer3|chr17 (22402868-22402716) | |
| 527-667, gnl|dasNov1|scaffold_5935 (5916-5769) | |
| 527-667, gnl|echTel1|scaffold_170502 (11366-11219) | |
| 527-667, gnl|fr1|chrUn (104231573-104231421) | |
| 527-667, gnl|galGal2|chr6 (10477616-10477468) | |
| 527-667, gnl|hg17|chr10 (74498602-74498754) | |
| 527-667, gnl|Hg17|chr10 (74498749-74498609) | |
| 527-667, gnl|loxAfr1|scaffold_38729 (1908-1756) | |
| 527-667, gnl|mm7|chr10 (58861999-58861847) | |
| 527-667, gnl|Mm7|chr10 (58861850-58861990) | |
| 527-667, gnl|monDom2|scaffold_14 (1112881-1113033) | |
| 527-667, gnl|oryCun1|scaffold_145236 (7466-7315) | |
| 527-667, gnl|panTro1|chr8_random (39955278-39955430) | |
| 527-667, gnl|rheMac2|chr9 (63876783-63876631) | |
| 527-667, gnl|rn3|chrUn (15101572-15101724) | |
| 527-667, gnl|tetNig1|chrUn_random (9711679-9711532) | |
| 527-667, gnl|xenTro1|scaffold_171 (818898-818746) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-179, gnl|bosTau2|chr7 (16065693-16065547) | |
| 33-179, gnl|canFam2|chr11 (23552250-23552690) | |
| 33-179, gnl|hg17|chr5 (131590545-131591007) | |
| 33-179, gnl|Hg17|chr5 (131590833-131590678) | |
| 33-179, gnl|mm7|chr11 (54058528-54058098) | |
| 33-179, gnl|Mm7|chr11 (54058262-54058404) | |
| 33-179, gnl|oryCun1|scaffold_181949 (43631-43993) | |
| 33-179, gnl|panTro1|chr4 (137923627-137924089) | |
| 33-179, gnl|rheMac2|chr6 (128640689-128641151) | |
| 33-179, gnl|rn3|chr10 (39536591-39536207) | |
| 279-379, gnl|bosTau2|chr7 (16056446-16056346) | |
| 279-379, gnl|canFam2|chr11 (23543713-23543865) | |
| 279-379, gnl|danRer3|chr21 (39763183-39763061) | |
| 279-379, gnl|dasNov1|scaffold_5935 (1882-1728) | |
| 279-379, gnl|echTel1|scaffold_170502 (6799-6647) | |
| 279-379, gnl|fr1|chrUn (144476091-144476241) | |
| 279-379, gnl|galGal2|chr13 (15770679-15770814) | |
| 279-379, gnl|hg17|chr5 (131581331-131581479) | |
| 279-379, gnl|Hg17|chr5 (131581441-131581341) | |
| 279-379, gnl|loxAfr1|scaffold_20954 (18873-19009) | |
| 279-379, gnl|mm7|chr11 (54067861-54067709) | |
| 279-379, gnl|Mm7|chr11 (54067742-54067842) | |
| 279-379, gnl|monDom2|scaffold_6 (93927224-93927086) | |
| 279-379, gnl|oryCun1|scaffold_181949 (30843-30995) | |
| 279-379, gnl|panTro1|chr4 (137914389-137914537) | |
| 279-379, gnl|rheMac2|chr6 (128631491-128631639) | |
| 279-379, gnl|rn3|chr10 (39545343-39545192) | |
| 279-379, gnl|tetNig1|chr7 (8461584-8461468) | |
| 279-379, gnl|xenTro1|scaffold_1111 (260897-261017) | |
| 527-667, gnl|bosTau2|chr28 (22360646-22360506) | |
| 527-667, gnl|canFam2|chr4 (26869057-26869207) | |
| 527-667, gnl|danRer3|chr17 (22402868-22402716) | |
| 527-667, gnl|dasNov1|scaffold_5935 (5916-5769) | |
| 527-667, gnl|echTel1|scaffold_170502 (11366-11219) | |
| 527-667, gnl|fr1|chrUn (104231573-104231421) | |
| 527-667, gnl|galGal2|chr6 (10477616-10477468) | |
| 527-667, gnl|hg17|chr10 (74498602-74498754) | |
| 527-667, gnl|Hg17|chr10 (74498749-74498609) | |
| 527-667, gnl|loxAfr1|scaffold_38729 (1908-1756) | |
| 527-667, gnl|mm7|chr10 (58861999-58861847) | |
| 527-667, gnl|Mm7|chr10 (58861850-58861990) | |
| 527-667, gnl|monDom2|scaffold_14 (1112881-1113033) | |
| 527-667, gnl|oryCun1|scaffold_145236 (7466-7315) | |
| 527-667, gnl|panTro1|chr8_random (39955278-39955430) | |
| 527-667, gnl|rheMac2|chr9 (63876783-63876631) | |
| 527-667, gnl|rn3|chrUn (15101572-15101724) | |
| 527-667, gnl|tetNig1|chrUn_random (9711679-9711532) | |
| 527-667, gnl|xenTro1|scaffold_171 (818898-818746) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| nep (0.183925) |