Non-Coding RNA Search

Ss1.1-rnep07c_n3.5

Sequence:


               
               CGGATCTGGTCCGACCAAGTGAAAGATCTGTTTTGCGCCCCGGATGTAGCCCTGGCAAAA
GCTTTTTTTCCCATTCTTCCTCCGCCTTCCCTGGCTCCTTAGCTCAGCTTGGGGAAGACC
CTCTGACCAATCATGCTAAAGAGGAAAGTGACCTTCCAAGGCGTGGGAGACGAGGAGGAT
GAGGATGGAATCAGTGTCCCCAAGAAGTTGGTGGACTCTGTGGCTGGGGTAGGGGGTCCT
GGGAGCCGCTTCAAAGACAAACACTCTTTGGACAGCGATGAAGAGGATGACGATGATGAT
GGGTCCAGCAAATATGACATCTTGGCCTCAGAGGATGTGGAAGGTCAGGAAGCGGCCACA
CTCCCCAGTGAGGGAGGTGTGCGGATCACACCTTTCAACCTGCAGGAAGAGATGGAGGAA
GGCCACTTTGATGCTGATGGCAACTATTTCCTGAACCGGGATGCTCAGATCCGAGACAGC
TGGCTGGACAACATTGACTGGGTGAAGATCAGGGAGCGACCACCTGATCAGCGCCCACTG
TCAGACTCCGAGGAGGAGGACAGTCTGGGCCAGACACCAATGAGCGTCCAAGCCCTCCTA
GAGGGGCTTCTGGAGCTGCTGTTGCCCAGAGAGACAGTGGCTGGGGCACTGAGGCGTCTA
GGGGCCCGAGGAGGAGGCAAAGGGGGCAGCAAGGGGCCTGGGCGGCCCAGTTCCCCCCAG
CGCCTGGATCGGCTTTCTGGGTTGGCTGACCAGATGGTGGCCCGGGGCAACCTCGGAGTA
TATCAGGAGACAAGGGAACGACTGGCCATGCGCCTGAAAGGATTGGGGTGCCGGACCCAG
GGAGCCCCTGACCCCACACCCCCACCGTCTCTGGACATGTTTGCTGAGGAGGTGGCGGAG
GCAGAGCTGGAGACCCCAACCCCTGCCCAGAAAGAAGAAGCAGAGTCACCCGGAGATGGT
TTGGCGGACGTGATGTGGGAATATAAATGGGAGAACACGGGGGATGCTGAGCTGTACGGC
CCTTTCAGCAGCACCCAGATGCAGACCTGGGTGAACGAAGGCTACTTCCCAGATGGTGTT
TATTGCCGGAAGCTCGACCCCCCCGGCGGACAGTTCTACAACTCCAAACGGATTGACTTT
GACCTCTACACCTGAGCCTACCGAGGACCCAGTTGGGGGCCCTGTTTTTTTTTTTTTTTT
TTTCCTGGACTCTGTGGAGGAGGCCCTGGCTGCCTCGGGCAATGAGGACATCAGGGGGCT
GCTTTTCTTTTCAGTCAAGTTCCTTTTCCCAATAAAAGCTTTTAGTTGTGTCTTAGGGCC
TTGGCTGTGCTGACGGCCAGAAGCCGGGGCCCTTTTGCCCTTTTCCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGATCTGGTCCGACCAAGTGAAAGATCTGTTTTGCGCCCCGGATGTAGCCCTGGCAAAA
GCTTTTTTTCCCATTCTTCCTCCGCCTTCCCTGGCTCCTTAGCTCAGCTTGGGGAAGACC
CTCTGACCAATCATGCTAAAGAGGAAAGTGACCTTCCAAGGCGTGGGAGACGAGGAGGAT
GAGGATGGAATCAGTGTCCCCAAGAAGTTGGTGGACTCTGTGGCTGGGGTAGGGGGTCCT
GGGAGCCGCTTCAAAGACAAACACTCTTTGGACAGCGATGAAGAGGATGACGATGATGAT
GGGTCCAGCAAATATGACATCTTGGCCTCAGAGGATGTGGAAGGTCAGGAAGCGGCCACA
CTCCCCAGTGAGGGAGGTGTGCGGATCACACCTTTCAACCTGCAGGAAGAGATGGAGGAA
GGCCACTTTGATGCTGATGGCAACTATTTCCTGAACCGGGATGCTCAGATCCGAGACAGC
TGGCTGGACAACATTGACTGGGTGAAGATCAGGGAGCGACCACCTGATCAGCGCCCACTG
TCAGACTCCGAGGAGGAGGACAGTCTGGGCCAGACACCAATGAGCGTCCAAGCCCTCCTA
GAGGGGCTTCTGGAGCTGCTGTTGCCCAGAGAGACAGTGGCTGGGGCACTGAGGCGTCTA
GGGGCCCGAGGAGGAGGCAAAGGGGGCAGCAAGGGGCCTGGGCGGCCCAGTTCCCCCCAG
CGCCTGGATCGGCTTTCTGGGTTGGCTGACCAGATGGTGGCCCGGGGCAACCTCGGAGTA
TATCAGGAGACAAGGGAACGACTGGCCATGCGCCTGAAAGGATTGGGGTGCCGGACCCAG
GGAGCCCCTGACCCCACACCCCCACCGTCTCTGGACATGTTTGCTGAGGAGGTGGCGGAG
GCAGAGCTGGAGACCCCAACCCCTGCCCAGAAAGAAGAAGCAGAGTCACCCGGAGATGGT
TTGGCGGACGTGATGTGGGAATATAAATGGGAGAACACGGGGGATGCTGAGCTGTACGGC
CCTTTCAGCAGCACCCAGATGCAGACCTGGGTGAACGAAGGCTACTTCCCAGATGGTGTT
TATTGCCGGAAGCTCGACCCCCCCGGCGGACAGTTCTACAACTCCAAACGGATTGACTTT
GACCTCTACACCTGAGCCTACCGAGGACCCAGTTGGGGGCCCTGTTTTTTTTTTTTTTTT
TTTCCTGGACTCTGTGGAGGAGGCCCTGGCTGCCTCGGGCAATGAGGACATCAGGGGGCT
GCTTTTCTTTTCAGTCAAGTTCCTTTTCCCAATAAAAGCTTTTAGTTGTGTCTTAGGGCC
TTGGCTGTGCTGACGGCCAGAAGCCGGGGCCCTTTTGCCCTTTTCCAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|27065275|pdb|1L2Z|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27065275|pdb|1L2Z|A

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               206-321, + strand, RNAz p=0.666047
               

               
               580-937, + strand, RNAz p=0.967735

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               206-321, + strand, RNAz p=0.666047
               

               
               580-937, + strand, RNAz p=0.967735

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC000495, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC000495, +

Aligned organism(s): 23 entry(ies)

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Aligned organism(s): 23 entry(ies)

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               206-348, gnl|bosTau2|chr25 (24434322-24434467)
               

               
               206-348, gnl|canFam2|chr6 (20750961-20750809)
               

               
               206-348, gnl|danRer3|chr3 (26983774-26983905)
               

               
               206-348, gnl|dasNov1|scaffold_166697 (1241-1385)
               

               
               206-348, gnl|fr1|chrUn (272451672-272451819)
               

               
               206-348, gnl|hg17|chr16 (30272984-30273139)
               

               
               206-348, gnl|Hg17|chr16 (30273146-30273001)
               

               
               206-348, gnl|loxAfr1|scaffold_43166 (33144-32992)
               

               
               206-348, gnl|mm7|chr7 (123291558-123291711)
               

               
               206-348, gnl|Mm7|chr7 (123291718-123291576)
               

               
               206-348, gnl|monDom2|scaffold_17 (8349958-8350092)
               

               
               206-348, gnl|oryCun1|scaffold_51889 (619-475)
               

               
               206-348, gnl|panTro1|chr18 (31039084-31039239)
               

               
               206-348, gnl|rheMac2|chr20 (28410370-28410522)
               

               
               206-348, gnl|rn3|chr1 (186604331-186604481)
               

               
               206-348, gnl|tetNig1|chr3 (13739592-13739451)
               

               
               206-348, gnl|xenTro1|scaffold_409 (1098919-1098771)
               


               
               501-937, gnl|bosTau2|chr25 (24434827-24435263)
               

               
               501-937, gnl|Hg17|chr16 (30272623-30272190)
               

               
               501-937, gnl|Mm7|chr7 (123291200-123290761)
               


               
               1040-1350, gnl|bosTau2|chr25 (24435535-24435827)
               

               
               1040-1350, gnl|Hg17|chr16 (30271922-30271636)
               

               
               1040-1350, gnl|Mm7|chr7 (123290493-123290222)

Aligned organism(s): 23 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               206-348, gnl|bosTau2|chr25 (24434322-24434467)
               

               
               206-348, gnl|canFam2|chr6 (20750961-20750809)
               

               
               206-348, gnl|danRer3|chr3 (26983774-26983905)
               

               
               206-348, gnl|dasNov1|scaffold_166697 (1241-1385)
               

               
               206-348, gnl|fr1|chrUn (272451672-272451819)
               

               
               206-348, gnl|hg17|chr16 (30272984-30273139)
               

               
               206-348, gnl|Hg17|chr16 (30273146-30273001)
               

               
               206-348, gnl|loxAfr1|scaffold_43166 (33144-32992)
               

               
               206-348, gnl|mm7|chr7 (123291558-123291711)
               

               
               206-348, gnl|Mm7|chr7 (123291718-123291576)
               

               
               206-348, gnl|monDom2|scaffold_17 (8349958-8350092)
               

               
               206-348, gnl|oryCun1|scaffold_51889 (619-475)
               

               
               206-348, gnl|panTro1|chr18 (31039084-31039239)
               

               
               206-348, gnl|rheMac2|chr20 (28410370-28410522)
               

               
               206-348, gnl|rn3|chr1 (186604331-186604481)
               

               
               206-348, gnl|tetNig1|chr3 (13739592-13739451)
               

               
               206-348, gnl|xenTro1|scaffold_409 (1098919-1098771)
               


               
               501-937, gnl|bosTau2|chr25 (24434827-24435263)
               

               
               501-937, gnl|Hg17|chr16 (30272623-30272190)
               

               
               501-937, gnl|Mm7|chr7 (123291200-123290761)
               


               
               1040-1350, gnl|bosTau2|chr25 (24435535-24435827)
               

               
               1040-1350, gnl|Hg17|chr16 (30271922-30271636)
               

               
               1040-1350, gnl|Mm7|chr7 (123290493-123290222)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               amn (0.417711)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               hea (0.204499)
               

               
               jej (0.197844)
               

               
               nep (0.183925)
               

               
               eye (0.170503)
               

               
               cki (0.165235)
               

               
               ssp (0.13552)
               

               
               nmm (0.132802)
               

               
               ese (0.126502)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)

	206-321, + strand, RNAz p=0.666047
	580-937, + strand, RNAz p=0.967735

	206-348, gnl\|bosTau2\|chr25 (24434322-24434467)
	206-348, gnl\|canFam2\|chr6 (20750961-20750809)
	206-348, gnl\|danRer3\|chr3 (26983774-26983905)
	206-348, gnl\|dasNov1\|scaffold_166697 (1241-1385)
	206-348, gnl\|fr1\|chrUn (272451672-272451819)
	206-348, gnl\|hg17\|chr16 (30272984-30273139)
	206-348, gnl\|Hg17\|chr16 (30273146-30273001)
	206-348, gnl\|loxAfr1\|scaffold_43166 (33144-32992)
	206-348, gnl\|mm7\|chr7 (123291558-123291711)
	206-348, gnl\|Mm7\|chr7 (123291718-123291576)
	206-348, gnl\|monDom2\|scaffold_17 (8349958-8350092)
	206-348, gnl\|oryCun1\|scaffold_51889 (619-475)
	206-348, gnl\|panTro1\|chr18 (31039084-31039239)
	206-348, gnl\|rheMac2\|chr20 (28410370-28410522)
	206-348, gnl\|rn3\|chr1 (186604331-186604481)
	206-348, gnl\|tetNig1\|chr3 (13739592-13739451)
	206-348, gnl\|xenTro1\|scaffold_409 (1098919-1098771)

	501-937, gnl\|bosTau2\|chr25 (24434827-24435263)
	501-937, gnl\|Hg17\|chr16 (30272623-30272190)
	501-937, gnl\|Mm7\|chr7 (123291200-123290761)

	1040-1350, gnl\|bosTau2\|chr25 (24435535-24435827)
	1040-1350, gnl\|Hg17\|chr16 (30271922-30271636)
	1040-1350, gnl\|Mm7\|chr7 (123290493-123290222)

	amn (0.417711)
	hea (0.204499)
	jej (0.197844)
	nep (0.183925)
	eye (0.170503)
	cki (0.165235)
	ssp (0.13552)
	nmm (0.132802)
	ese (0.126502)
	cty (0.10408)
	eje (0.0988338)