Non-Coding RNA Search

Ss1.1-rnep07c_n8.5

Sequence:


               
               GTTTGTTGTGAGGACCCAGTAAGTGTCTCCACCAAATCTTTCATCTGCAATTTATGCTGC
CAAAGGGCCCTCCCCATTCTTCCTCTTCCAAGTCCCCAAGGACTTCAGGGAGAAGGTTCT
GTATTACGTTATGTCAAGATTGATAAGGAAAGAAGACCTAATATCCAGAATGAGCAGTAG
GTGGAACAGTGGGGTGATGATGAGACTAGTAGAGAGACCCAGTGAGAAGTTTTTATTTCT
TTTAGATGATCACTTTTGAAATATATGGTAAAACTTTCACCATCCTTCCTATATATTTGG
CACCTCAAGTTACACATTTTTCTTCTTCCTTATAAATCATTTATACAATATTTATTTTTG
TATGGCATAACTATAAACTAAAATATATTGAAAAGATTCTTTATTCTGAGCAAACGATCA
AATTAGAATACATATTTTTCAACAGTGGTAGAGCGTGTAATATATGTTTATGGAACGTTA
TCTATAATACTTGCACCAGTGTTGAAAAAAAGTTAACGTTGTGAGCAAGAGTAAGTAATA
TGTTGGCCTCAAGGATTTTGCTCATGGTCTCCTCAGTGGTGTTGTCCCAGAAGTATTTGG
GGCTGGGGTGACATCACTAGTTTCTCTGCAGGGTTAGGGGGCACATTTGCATGAACTTTG
GTGCAGTCTTTGCTGGTCAGGAGGATAGTTTTGTCATGGTCCATCTGACCACCAGCACAG
GAAAAGGTCTCGGGGTCAGAAAATGAGCCCCTCTCAGGGACCAAACATGAACTGACAGCA
GTGACTCTGCATTGCATCAAATGGCCTTAATTCAGAGTTGGGTAGGCTTAGCCATATGTT
GCTTACCCTTGGGGTGGGGGAAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGTTGTGAGGACCCAGTAAGTGTCTCCACCAAATCTTTCATCTGCAATTTATGCTGC
CAAAGGGCCCTCCCCATTCTTCCTCTTCCAAGTCCCCAAGGACTTCAGGGAGAAGGTTCT
GTATTACGTTATGTCAAGATTGATAAGGAAAGAAGACCTAATATCCAGAATGAGCAGTAG
GTGGAACAGTGGGGTGATGATGAGACTAGTAGAGAGACCCAGTGAGAAGTTTTTATTTCT
TTTAGATGATCACTTTTGAAATATATGGTAAAACTTTCACCATCCTTCCTATATATTTGG
CACCTCAAGTTACACATTTTTCTTCTTCCTTATAAATCATTTATACAATATTTATTTTTG
TATGGCATAACTATAAACTAAAATATATTGAAAAGATTCTTTATTCTGAGCAAACGATCA
AATTAGAATACATATTTTTCAACAGTGGTAGAGCGTGTAATATATGTTTATGGAACGTTA
TCTATAATACTTGCACCAGTGTTGAAAAAAAGTTAACGTTGTGAGCAAGAGTAAGTAATA
TGTTGGCCTCAAGGATTTTGCTCATGGTCTCCTCAGTGGTGTTGTCCCAGAAGTATTTGG
GGCTGGGGTGACATCACTAGTTTCTCTGCAGGGTTAGGGGGCACATTTGCATGAACTTTG
GTGCAGTCTTTGCTGGTCAGGAGGATAGTTTTGTCATGGTCCATCTGACCACCAGCACAG
GAAAAGGTCTCGGGGTCAGAAAATGAGCCCCTCTCAGGGACCAAACATGAACTGACAGCA
GTGACTCTGCATTGCATCAAATGGCCTTAATTCAGAGTTGGGTAGGCTTAGCCATATGTT
GCTTACCCTTGGGGTGGGGGAAGT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               425-533, - strand, RNAz p=0.522998

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               425-533, - strand, RNAz p=0.522998

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               6-864, gnl|bosTau2|chr2 (32952070-32952942)
               

               
               6-864, gnl|canFam2|chr19 (54088831-54090164)
               

               
               6-864, gnl|dasNov1|scaffold_19276 (45287-46622)
               

               
               6-864, gnl|echTel1|scaffold_319271 (346467-347753)
               

               
               6-864, gnl|hg17|chr2 (150153224-150154576)
               

               
               6-864, gnl|Hg17|chr2 (150153794-150154653)
               

               
               6-864, gnl|loxAfr1|scaffold_5889 (36695-35312)
               

               
               6-864, gnl|mm7|chr2 (50198498-50199805)
               

               
               6-864, gnl|Mm7|chr2 (50199028-50199883)
               

               
               6-864, gnl|monDom2|scaffold_2 (39984837-39986271)
               

               
               6-864, gnl|oryCun1|scaffold_210532 (8272-9572)
               

               
               6-864, gnl|panTro1|chr13 (39214938-39216293)
               

               
               6-864, gnl|rheMac2|chr12 (13148882-13150253)
               

               
               6-864, gnl|rn3|chr3 (31042269-31043589)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               6-864, gnl|bosTau2|chr2 (32952070-32952942)
               

               
               6-864, gnl|canFam2|chr19 (54088831-54090164)
               

               
               6-864, gnl|dasNov1|scaffold_19276 (45287-46622)
               

               
               6-864, gnl|echTel1|scaffold_319271 (346467-347753)
               

               
               6-864, gnl|hg17|chr2 (150153224-150154576)
               

               
               6-864, gnl|Hg17|chr2 (150153794-150154653)
               

               
               6-864, gnl|loxAfr1|scaffold_5889 (36695-35312)
               

               
               6-864, gnl|mm7|chr2 (50198498-50199805)
               

               
               6-864, gnl|Mm7|chr2 (50199028-50199883)
               

               
               6-864, gnl|monDom2|scaffold_2 (39984837-39986271)
               

               
               6-864, gnl|oryCun1|scaffold_210532 (8272-9572)
               

               
               6-864, gnl|panTro1|chr13 (39214938-39216293)
               

               
               6-864, gnl|rheMac2|chr12 (13148882-13150253)
               

               
               6-864, gnl|rn3|chr3 (31042269-31043589)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               nep (0.183925)
               

               
               lin (0.145603)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               lin (0.145603)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	6-864, gnl\|bosTau2\|chr2 (32952070-32952942)
	6-864, gnl\|canFam2\|chr19 (54088831-54090164)
	6-864, gnl\|dasNov1\|scaffold_19276 (45287-46622)
	6-864, gnl\|echTel1\|scaffold_319271 (346467-347753)
	6-864, gnl\|hg17\|chr2 (150153224-150154576)
	6-864, gnl\|Hg17\|chr2 (150153794-150154653)
	6-864, gnl\|loxAfr1\|scaffold_5889 (36695-35312)
	6-864, gnl\|mm7\|chr2 (50198498-50199805)
	6-864, gnl\|Mm7\|chr2 (50199028-50199883)
	6-864, gnl\|monDom2\|scaffold_2 (39984837-39986271)
	6-864, gnl\|oryCun1\|scaffold_210532 (8272-9572)
	6-864, gnl\|panTro1\|chr13 (39214938-39216293)
	6-864, gnl\|rheMac2\|chr12 (13148882-13150253)
	6-864, gnl\|rn3\|chr3 (31042269-31043589)