Ss1.1-rnep08c_i13.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTGACCTGTTGAACGACCTCCAGAAAGCAGGTAAGATCACAGCGGAGGAGGCTAACAAG TCCAGCTACCTGAACATCGTGGGCCTGGTGGGCTCCATTGACAATGACTTTTGCGGCACC GATATGACCATTGGCACGGACTCGGCCCTGCACCGGATCATAGAGATCGTAGATGCCATC ACTACTACCGCCCAGAGCCACCAGAGGACATTTGTGTTAGAAGTGATGGGCCGGCACTGT GGGTACCTGGCCCTTGTCACCTCTCTCTCCTGTGGGGCCGACTGGGTTTTTATTCCTGAG TGTCCGCCGGATGATGCCTGGGAGGAGCATCTTTGTCGCCGGCTCAGCGAGACAAGGACC CGGGGTTCTCGTCTCAACATCATCATTGTGGCTGAGGGTGCGATTGACAAGAATGGACAG CCAATCACCTCAGAAAATATCAAAGACCTGGTGGTAAAGCGTCTGGGATATGACACCCGG GTCACCGTCTTGGGGCACGTGCAGCGGGGTGGGACACCGTCGGCCTTTGACAGAATCCTG GGCAGCAGGATGGGTGTGGAAGCAGTGATGGCACTTTTGGAGGGGACCCCGGACACCCCT GCCTGTGTGGTGAGCCTCTCTGGTAACCAGGCTGTGCGCCTGCCCCTCATGGAGTGCGTC CAGGTGACCAAAGACGTGACCAAGGCCATGAATGAGAAGAGATTTGATGAAGCCATGAAG CTGAGAGGCCGGAGCTTCATGAACAACTGGGAGGTATACAAGCTTCTGGCTCACGTCAGA CCCCCAGTGACTAAGAGTGGCTCTTACACAGTGGCCGTGATGAACGTGGGGGCCCCAGCC GCAGGCATGAATGCCGCTGTCCGCTCCACTGTGAGAATTGGCCTCATCCAGGGCAACCGA GTGCTGGTTGTGCACGATGGCTTCGAGGGCTTAGCCAAGGGTCAGATCGAGGAGGCTGGC TGGAGCTATGTTGGGGGCTGGACTGGCCAAGGTGGTTCTAAACTTGGGACTAAAAGGACT CTCCCCAAGAAGAGCTTCGAACAGATCAGTGCCAAC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTGACCTGTTGAACGACCTCCAGAAAGCAGGTAAGATCACAGCGGAGGAGGCTAACAAG TCCAGCTACCTGAACATCGTGGGCCTGGTGGGCTCCATTGACAATGACTTTTGCGGCACC GATATGACCATTGGCACGGACTCGGCCCTGCACCGGATCATAGAGATCGTAGATGCCATC ACTACTACCGCCCAGAGCCACCAGAGGACATTTGTGTTAGAAGTGATGGGCCGGCACTGT GGGTACCTGGCCCTTGTCACCTCTCTCTCCTGTGGGGCCGACTGGGTTTTTATTCCTGAG TGTCCGCCGGATGATGCCTGGGAGGAGCATCTTTGTCGCCGGCTCAGCGAGACAAGGACC CGGGGTTCTCGTCTCAACATCATCATTGTGGCTGAGGGTGCGATTGACAAGAATGGACAG CCAATCACCTCAGAAAATATCAAAGACCTGGTGGTAAAGCGTCTGGGATATGACACCCGG GTCACCGTCTTGGGGCACGTGCAGCGGGGTGGGACACCGTCGGCCTTTGACAGAATCCTG GGCAGCAGGATGGGTGTGGAAGCAGTGATGGCACTTTTGGAGGGGACCCCGGACACCCCT GCCTGTGTGGTGAGCCTCTCTGGTAACCAGGCTGTGCGCCTGCCCCTCATGGAGTGCGTC CAGGTGACCAAAGACGTGACCAAGGCCATGAATGAGAAGAGATTTGATGAAGCCATGAAG CTGAGAGGCCGGAGCTTCATGAACAACTGGGAGGTATACAAGCTTCTGGCTCACGTCAGA CCCCCAGTGACTAAGAGTGGCTCTTACACAGTGGCCGTGATGAACGTGGGGGCCCCAGCC GCAGGCATGAATGCCGCTGTCCGCTCCACTGTGAGAATTGGCCTCATCCAGGGCAACCGA GTGCTGGTTGTGCACGATGGCTTCGAGGGCTTAGCCAAGGGTCAGATCGAGGAGGCTGGC TGGAGCTATGTTGGGGGCTGGACTGGCCAAGGTGGTTCTAAACTTGGGACTAAAAGGACT CTCCCCAAGAAGAGCTTCGAACAGATCAGTGCCAAC |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 29-197, gnl|bosTau2|chr5 (25653092-25653260) | |
| 29-197, gnl|Hg17|chr12 (46813362-46813530) | |
| 29-197, gnl|Mm7|chr15 (98124377-98124545) | |
| 540-666, gnl|bosTau2|chr5 (25655604-25655730) | |
| 540-666, gnl|canFam2|chr27 (9640543-9640392) | |
| 540-666, gnl|danRer3|chr6 (20588208-20588359) | |
| 540-666, gnl|dasNov1|scaffold_17370 (41560-41409) | |
| 540-666, gnl|echTel1|scaffold_284847 (8349-8496) | |
| 540-666, gnl|fr1|chrUn (41716279-41716130) | |
| 540-666, gnl|galGal2|chr9 (9222384-9222235) | |
| 540-666, gnl|hg17|chr12 (46817754-46817905) | |
| 540-666, gnl|Hg17|chr12 (46817770-46817896) | |
| 540-666, gnl|loxAfr1|scaffold_48233 (4147-4026) | |
| 540-666, gnl|mm7|chr15 (98126962-98127113) | |
| 540-666, gnl|Mm7|chr15 (98126978-98127104) | |
| 540-666, gnl|monDom2|scaffold_189 (631344-631481) | |
| 540-666, gnl|oryCun1|scaffold_61391 (704-553) | |
| 540-666, gnl|panTro1|chr10 (47887146-47887297) | |
| 540-666, gnl|rheMac2|chr11 (45217309-45217460) | |
| 540-666, gnl|rn3|chr7 (136912987-136913138) | |
| 540-666, gnl|tetNig1|chr9 (3249199-3249348) | |
| 540-666, gnl|xenTro1|scaffold_34 (444587-444725) | |
| 794-965, gnl|bosTau2|chr5 (25657976-25658148) | |
| 794-965, gnl|Hg17|chr12 (46820768-46820940) | |
| 794-965, gnl|Mm7|chr15 (98129485-98129648) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 29-197, gnl|bosTau2|chr5 (25653092-25653260) | |
| 29-197, gnl|Hg17|chr12 (46813362-46813530) | |
| 29-197, gnl|Mm7|chr15 (98124377-98124545) | |
| 540-666, gnl|bosTau2|chr5 (25655604-25655730) | |
| 540-666, gnl|canFam2|chr27 (9640543-9640392) | |
| 540-666, gnl|danRer3|chr6 (20588208-20588359) | |
| 540-666, gnl|dasNov1|scaffold_17370 (41560-41409) | |
| 540-666, gnl|echTel1|scaffold_284847 (8349-8496) | |
| 540-666, gnl|fr1|chrUn (41716279-41716130) | |
| 540-666, gnl|galGal2|chr9 (9222384-9222235) | |
| 540-666, gnl|hg17|chr12 (46817754-46817905) | |
| 540-666, gnl|Hg17|chr12 (46817770-46817896) | |
| 540-666, gnl|loxAfr1|scaffold_48233 (4147-4026) | |
| 540-666, gnl|mm7|chr15 (98126962-98127113) | |
| 540-666, gnl|Mm7|chr15 (98126978-98127104) | |
| 540-666, gnl|monDom2|scaffold_189 (631344-631481) | |
| 540-666, gnl|oryCun1|scaffold_61391 (704-553) | |
| 540-666, gnl|panTro1|chr10 (47887146-47887297) | |
| 540-666, gnl|rheMac2|chr11 (45217309-45217460) | |
| 540-666, gnl|rn3|chr7 (136912987-136913138) | |
| 540-666, gnl|tetNig1|chr9 (3249199-3249348) | |
| 540-666, gnl|xenTro1|scaffold_34 (444587-444725) | |
| 794-965, gnl|bosTau2|chr5 (25657976-25658148) | |
| 794-965, gnl|Hg17|chr12 (46820768-46820940) | |
| 794-965, gnl|Mm7|chr15 (98129485-98129648) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| nep (0.551775) | |
| mas (0.210305) | |
| ton (0.1755) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ebs (0.118301) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.551775) | |
| mas (0.210305) | |
| ton (0.1755) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| ebs (0.118301) |