Non-Coding RNA Search

Ss1.1-rnep11c_g15.5

Sequence:


               
               GTCATTTTGTTTCTGTTATGGGATGGCTTGTTATGGGGCATGGGGAGGGGTCTCTGAGCG
AATCATGGGACTGGGAGGGAATGGAGGGAATGCAAGTGGCCTCCTGGATGGAAAGGTTTG
GGGGGAGACTACCTGCCATGAGAGAGACGAGAGAGACCATGAGAGAGACCTGGGAGGGAG
GCAGAGGCCCCCGGAGCTGGGAGCCTTCTCAGAAGCCTGCCTTCACAGTCAGGGCCCCAG
AGGAAGGTGTGGCTGCCCTCGACCAAAGCAAGACAGCGGCTGGCTCTTTTCTGCTTCCCC
TGATGGGATCCCCCAAGGCCCCTGCTTGAAACCCAGCTGCAGGAGAGGTCCGTGTGGCAA
CGGGGGCGGGAAGGGAGAAATTCCCTCCAACAAAATTTCAGATAAACTGATTTGTGTATT
GTTTACATACCAATTTTAAAGGGTACATAATGTGTAAAGAGTTGGGATAGAACTTTTCTT
CATACTCTGGTTTTTGTAAAGGATTTGTTGATATGGATTCATTTTTTTTCCCTCTATTTT
TTTATAATAGCAGCAGGGTTGCCTTTTAAAGTGGCTGCCAAGCTCTGCTTCTCGGGAAGA
CGGATACTGTCATGTAGGCCTGAGTTGCGTCTTCCACCTGTGAGAGGAAGGAGTGTGCAG
GTGGAGCTGAAGGACCAGGATGCCGCTGGAATGGGCAGGGCACTGGGAGGGCGCCACCCT
GTGATCGATTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCATTTTGTTTCTGTTATGGGATGGCTTGTTATGGGGCATGGGGAGGGGTCTCTGAGCG
AATCATGGGACTGGGAGGGAATGGAGGGAATGCAAGTGGCCTCCTGGATGGAAAGGTTTG
GGGGGAGACTACCTGCCATGAGAGAGACGAGAGAGACCATGAGAGAGACCTGGGAGGGAG
GCAGAGGCCCCCGGAGCTGGGAGCCTTCTCAGAAGCCTGCCTTCACAGTCAGGGCCCCAG
AGGAAGGTGTGGCTGCCCTCGACCAAAGCAAGACAGCGGCTGGCTCTTTTCTGCTTCCCC
TGATGGGATCCCCCAAGGCCCCTGCTTGAAACCCAGCTGCAGGAGAGGTCCGTGTGGCAA
CGGGGGCGGGAAGGGAGAAATTCCCTCCAACAAAATTTCAGATAAACTGATTTGTGTATT
GTTTACATACCAATTTTAAAGGGTACATAATGTGTAAAGAGTTGGGATAGAACTTTTCTT
CATACTCTGGTTTTTGTAAAGGATTTGTTGATATGGATTCATTTTTTTTCCCTCTATTTT
TTTATAATAGCAGCAGGGTTGCCTTTTAAAGTGGCTGCCAAGCTCTGCTTCTCGGGAAGA
CGGATACTGTCATGTAGGCCTGAGTTGCGTCTTCCACCTGTGAGAGGAAGGAGTGTGCAG
GTGGAGCTGAAGGACCAGGATGCCGCTGGAATGGGCAGGGCACTGGGAGGGCGCCACCCT
GTGATCGATTAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-194, - strand, RNAz p=0.995962

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-194, - strand, RNAz p=0.995962

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-731, gnl|bosTau2|chr10 (45847007-45846295)
               

               
               1-731, gnl|Hg17|chr14 (54325609-54326348)
               

               
               1-731, gnl|Mm7|chr14 (42422763-42423502)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-731, gnl|bosTau2|chr10 (45847007-45846295)
               

               
               1-731, gnl|Hg17|chr14 (54325609-54326348)
               

               
               1-731, gnl|Mm7|chr14 (42422763-42423502)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               ldo (0.0970026)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               ldo (0.0970026)

	1-731, gnl\|bosTau2\|chr10 (45847007-45846295)
	1-731, gnl\|Hg17\|chr14 (54325609-54326348)
	1-731, gnl\|Mm7\|chr14 (42422763-42423502)