Non-Coding RNA Search

Ss1.1-rnep13c_e16.5

Sequence:


               
               CTCTCAGCCCAACTCCTGATACCATGGCCTGCTGTTCAACCAGCTTCTGTGGATTTCCCA
TCTGCTCCACCGGTGGGACCTGTGGCTCCAGCTGCTGCCAGCCAAGCTGTGTCCAGACCA
GCTGCTGCCAGCCAACCTGCGTCCAGACCAGCTGCTGCCAGCCAAGCTGTGTCCAGACCA
GCTGCTGCCAGCCACCCTGCGTCCAGACCAGCTGCTGCCAGACCAGTGGCTGTGAGATCG
GCAGTGGCATTGGCGGTGGCATTGGTGGTGGCATTGGCTCTGGCCAGGAGGGTAGCAGTG
GAGCTCGGAGCTACCGCATCAGGTGGTGCCGCCCTGACTGCCGCGTGGAGGGCACCGTCC
TGCCACCTTGCTGCGTGGTGAGCTGCACGCCCCCCACCTGCTGCCAGCTGCACCACGCCC
AGGCGTCCTGCTGCCGCCCCTCCTACTGTGGGCAGTCCTGCTGCCTGCCAGCCTGCTGCT
GCCAGTGCTCTGAGCCCACCTGCTGTGAGCCCACCTGCTAAAAACCTCTTCTGCCTAGAA
TCTTAAGCAAATCGGCCCTTCAATATTAGCCAGTGCAGAGACCCAACACACTTCTGAGCT
CTAACAGCCATAGCCCAGCCTGCAACCTTGTGTCACATGGCTATGATATTTCCCTAAGAT
GGATATTGATTTATAAGAGAGGATCAAAAATATTTCATAGACCTGGATATCAATAGAAGC
CCTACCATGTGAAAAGAGATGTCTTAATACTTTACTGTAATTATCACCGGGAATATTTCA
ACAGCTCATTGGTTTTGGATTTAATAAAACTTTTCATTCTTCAGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCTCAGCCCAACTCCTGATACCATGGCCTGCTGTTCAACCAGCTTCTGTGGATTTCCCA
TCTGCTCCACCGGTGGGACCTGTGGCTCCAGCTGCTGCCAGCCAAGCTGTGTCCAGACCA
GCTGCTGCCAGCCAACCTGCGTCCAGACCAGCTGCTGCCAGCCAAGCTGTGTCCAGACCA
GCTGCTGCCAGCCACCCTGCGTCCAGACCAGCTGCTGCCAGACCAGTGGCTGTGAGATCG
GCAGTGGCATTGGCGGTGGCATTGGTGGTGGCATTGGCTCTGGCCAGGAGGGTAGCAGTG
GAGCTCGGAGCTACCGCATCAGGTGGTGCCGCCCTGACTGCCGCGTGGAGGGCACCGTCC
TGCCACCTTGCTGCGTGGTGAGCTGCACGCCCCCCACCTGCTGCCAGCTGCACCACGCCC
AGGCGTCCTGCTGCCGCCCCTCCTACTGTGGGCAGTCCTGCTGCCTGCCAGCCTGCTGCT
GCCAGTGCTCTGAGCCCACCTGCTGTGAGCCCACCTGCTAAAAACCTCTTCTGCCTAGAA
TCTTAAGCAAATCGGCCCTTCAATATTAGCCAGTGCAGAGACCCAACACACTTCTGAGCT
CTAACAGCCATAGCCCAGCCTGCAACCTTGTGTCACATGGCTATGATATTTCCCTAAGAT
GGATATTGATTTATAAGAGAGGATCAAAAATATTTCATAGACCTGGATATCAATAGAAGC
CCTACCATGTGAAAAGAGATGTCTTAATACTTTACTGTAATTATCACCGGGAATATTTCA
ACAGCTCATTGGTTTTGGATTTAATAAAACTTTTCATTCTTCAGAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               KRB2A_SHEEP

Coded protein: 1 entry(ies)

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Protein identifier


               
               KRB2A_SHEEP

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               1-378, - strand, RNAz p=0.999964

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-378, - strand, RNAz p=0.999964

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-519, gnl|bosTau2|chr19 (33638567-33639073)
               

               
               1-519, gnl|Hg17|chr17 (36444622-36444113)
               

               
               1-519, gnl|Mm7|chr11 (99700381-99699854)
               


               
               536-824, gnl|bosTau2|chr19 (33631546-33631833)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-519, gnl|bosTau2|chr19 (33638567-33639073)
               

               
               1-519, gnl|Hg17|chr17 (36444622-36444113)
               

               
               1-519, gnl|Mm7|chr11 (99700381-99699854)
               


               
               536-824, gnl|bosTau2|chr19 (33631546-33631833)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nep (3.49457)
               

               
               ski (1.17388)
               

               
               csk (0.281492)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (3.49457)
               

               
               ski (1.17388)
               

               
               csk (0.281492)

	1-519, gnl\|bosTau2\|chr19 (33638567-33639073)
	1-519, gnl\|Hg17\|chr17 (36444622-36444113)
	1-519, gnl\|Mm7\|chr11 (99700381-99699854)

	536-824, gnl\|bosTau2\|chr19 (33631546-33631833)