Non-Coding RNA Search

Ss1.1-rnep13c_i19.5

Sequence:


               
               GGGCAGTGGGGTCGAGCCCGGTCTGTGGGGGAAATGGCCATGGACAGGTGGTACCTGGGC
GGCAGCCCCAAGGGGGACGTGGACCCATTTTACTACGACTATGAGACAGTCCGCAATGGG
GGCCTGATCTTCGCGGCCCTGGCCTTCATCGTGGGGCTCATCATCATCCTCAGCAAACGA
CTCCGCTGCGGGGGCAAGAAGCACCGGCCTATTAATGAAGACGAGCTGTAATGAGAGAGT
CGGCTGTGCCCCCATCGCAGCGGGGCCGCGTGGGAAGCCTTCCCTGGGCCGAGGACCTTG
GCCCTCAGCACTGCCAGGCCTTCGGGCTGAAGGATGCTCCAGGCTCCCGGGACCCCTGGG
TGGGCACCACCTCCTCACACCCCGTGCAGATAATAAAGCCAGCCTCCTTCTGTCCTGTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCAGTGGGGTCGAGCCCGGTCTGTGGGGGAAATGGCCATGGACAGGTGGTACCTGGGC
GGCAGCCCCAAGGGGGACGTGGACCCATTTTACTACGACTATGAGACAGTCCGCAATGGG
GGCCTGATCTTCGCGGCCCTGGCCTTCATCGTGGGGCTCATCATCATCCTCAGCAAACGA
CTCCGCTGCGGGGGCAAGAAGCACCGGCCTATTAATGAAGACGAGCTGTAATGAGAGAGT
CGGCTGTGCCCCCATCGCAGCGGGGCCGCGTGGGAAGCCTTCCCTGGGCCGAGGACCTTG
GCCCTCAGCACTGCCAGGCCTTCGGGCTGAAGGATGCTCCAGGCTCCCGGGACCCCTGGG
TGGGCACCACCTCCTCACACCCCGTGCAGATAATAAAGCCAGCCTCCTTCTGTCCTGTAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|30582281|gb|AAP35367.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|30582281|gb|AAP35367.1|

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               236-406, gnl|bosTau2|chr15 (14076293-14076124)
               

               
               236-406, gnl|canFam2|chr5 (18829154-18828795)
               

               
               236-406, gnl|hg17|chr11 (117196038-117196446)
               

               
               236-406, gnl|Hg17|chr11 (117196299-117196087)
               

               
               236-406, gnl|mm7|chr9 (45368394-45368065)
               

               
               236-406, gnl|Mm7|chr9 (45368211-45368355)
               

               
               236-406, gnl|panTro1|chr9 (119200355-119200763)
               

               
               236-406, gnl|rheMac2|chr14 (116211721-116212124)
               

               
               236-406, gnl|rn3|chr8 (48394769-48394436)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               236-406, gnl|bosTau2|chr15 (14076293-14076124)
               

               
               236-406, gnl|canFam2|chr5 (18829154-18828795)
               

               
               236-406, gnl|hg17|chr11 (117196038-117196446)
               

               
               236-406, gnl|Hg17|chr11 (117196299-117196087)
               

               
               236-406, gnl|mm7|chr9 (45368394-45368065)
               

               
               236-406, gnl|Mm7|chr9 (45368211-45368355)
               

               
               236-406, gnl|panTro1|chr9 (119200355-119200763)
               

               
               236-406, gnl|rheMac2|chr14 (116211721-116212124)
               

               
               236-406, gnl|rn3|chr8 (48394769-48394436)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cki (0.826173)
               

               
               nmm (0.265604)
               

               
               nep (0.183925)
               

               
               pty (0.142714)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cki (0.826173)
               

               
               nmm (0.265604)
               

               
               nep (0.183925)
               

               
               pty (0.142714)

	236-406, gnl\|bosTau2\|chr15 (14076293-14076124)
	236-406, gnl\|canFam2\|chr5 (18829154-18828795)
	236-406, gnl\|hg17\|chr11 (117196038-117196446)
	236-406, gnl\|Hg17\|chr11 (117196299-117196087)
	236-406, gnl\|mm7\|chr9 (45368394-45368065)
	236-406, gnl\|Mm7\|chr9 (45368211-45368355)
	236-406, gnl\|panTro1\|chr9 (119200355-119200763)
	236-406, gnl\|rheMac2\|chr14 (116211721-116212124)
	236-406, gnl\|rn3\|chr8 (48394769-48394436)