Ss1.1-rnep13c_j15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTCCCAAAAAGACCAAGAAAAATAATAGCAGCAACAGCAACACAAGCAAGAAGGAGCCAG CACCCTTGAAGAACAAGCCCCCTCCTGCATATGAGTCGGAAGAAGAGGACAAGTGCAAGC CCATGTCGTATGAGGAAAAGCGACAGCTTAGCTTGGACATCAACAAGCTCCCTGGCGAAA AGCTGGGCCGCGTGGTGCACATCATTCAGTCTCGAGAGCCCTCGCTCAAGAACTCCAACC CTGATGAGATTGAGATTGACTTTGAGACCCTGAAGCCATCTACTCTGCGTGAACTGGAGC GCTATGTCACCTCCTGTTTACGGAAGAAAAGGAAACCTCAAGCTGAGAAAGTTGACGTGA TTGCTGGCTCCTCCAAGATGAAGGGCTTCTCATCCTCAGAGTCAGAAAGCACCAGCGAGT CCAGCTCCTCTGACAGCGAAGACTCTGAAACAGAGATGGCTCCGAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTCCCAAAAAGACCAAGAAAAATAATAGCAGCAACAGCAACACAAGCAAGAAGGAGCCAG CACCCTTGAAGAACAAGCCCCCTCCTGCATATGAGTCGGAAGAAGAGGACAAGTGCAAGC CCATGTCGTATGAGGAAAAGCGACAGCTTAGCTTGGACATCAACAAGCTCCCTGGCGAAA AGCTGGGCCGCGTGGTGCACATCATTCAGTCTCGAGAGCCCTCGCTCAAGAACTCCAACC CTGATGAGATTGAGATTGACTTTGAGACCCTGAAGCCATCTACTCTGCGTGAACTGGAGC GCTATGTCACCTCCTGTTTACGGAAGAAAAGGAAACCTCAAGCTGAGAAAGTTGACGTGA TTGCTGGCTCCTCCAAGATGAAGGGCTTCTCATCCTCAGAGTCAGAAAGCACCAGCGAGT CCAGCTCCTCTGACAGCGAAGACTCTGAAACAGAGATGGCTCCGAAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 45-163, - strand, RNAz p=0.572382 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 45-163, - strand, RNAz p=0.572382 |
| Aligned organism(s): 9 entry(ies) | More info |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
| 45-345, gnl|bosTau2|chr7 (7044918-7045218) | |
| 45-345, gnl|Hg17|chr19 (15227405-15227105) | |
| 45-345, gnl|Mm7|chr17 (30405081-30404781) | |
| 81-329, gnl|bosTau2|chr23 (5651797-5651549) | |
| 81-329, gnl|Hg17|chr6 (33055623-33055871) | |
| 81-329, gnl|Mm7|chr17 (32193337-32193089) | |
| 90-328, gnl|bosTau2|chr11 (83912569-83912807) | |
| 90-328, gnl|Hg17|chr9 (133930963-133930725) | |
| 90-328, gnl|Mm7|chr2 (27457823-27457585) |
| Aligned organism(s): 9 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 45-345, gnl|bosTau2|chr7 (7044918-7045218) | |
| 45-345, gnl|Hg17|chr19 (15227405-15227105) | |
| 45-345, gnl|Mm7|chr17 (30405081-30404781) | |
| 81-329, gnl|bosTau2|chr23 (5651797-5651549) | |
| 81-329, gnl|Hg17|chr6 (33055623-33055871) | |
| 81-329, gnl|Mm7|chr17 (32193337-32193089) | |
| 90-328, gnl|bosTau2|chr11 (83912569-83912807) | |
| 90-328, gnl|Hg17|chr9 (133930963-133930725) | |
| 90-328, gnl|Mm7|chr2 (27457823-27457585) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nep (0.183925) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| clu (0.119646) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| mcp (0.170648) | |
| cag (0.151194) | |
| clu (0.119646) |