Non-Coding RNA Search

Ss1.1-rnep13c_m1.5.5

Sequence:


               
               GCCGGGCCCAGGAGCAACAGGAAGTACAGCGGGACGATGGATGCCTACAGGACCATCGCC
AGGGAGGAAGGGGTCCGGGGCCTGTGGAAAGGAATTCTGCCCAACATCACGAGGAATGCC
ATCGTGAACTGTGCCGAGATGGTGACCTATGATGTCATCAAGGAGAAGGTGCTAGACTAC
CACCTGCTCACGGACAACCTGCCCTGGCACTTTGTCTCTGCCTTCGGAGCTGGCTTCTGT
GCCACCGTGGTGGCCTCCCCAGTGGATGTGGTGAAGACCCGGTACATGAACTCGCCCCCC
GGCCAGTACCAGAACCCTCTGGACTGCATGCTGAAGATGGTGACCCAGGAGGGCCCCACA
GCCTTCTATAAAGGATTCACACCTTCCTTTTTGCGCTTGGGAAGCTGGAACGTGGTGATG
TTTGTAAGCTACGAGCAGCTGAAACGGGCCTTGATGAAAGTCCAGATGCTGCGGGAATCT
CCGTTTTGAGTAAGACAAAGCCACCTGGCGTTTCACGAAGGCAAAACCAGCCAAGGGGTG
ACAGGCGCCGCTGTGGGTCTGAGCACATAAGGCCACAGGCCCACCCACATTTACACAATG
GTCTACTTGCCGCCAACTTGGGAAATAGGAGGAGGAGAACTGTGGTCTCCAGTGCTTTAC
CTTCAGTACACGTTCGTGTGGCACTGCCAAGATGCACAATAAATTATATTAATTTGTGAA
ACCCACTAGGATGGATGCCTAACATTTAGGCAAAAGAAGATAAACCAGAATGGATCCATA
TGGATAAAACAGACGTTTGCAAACTTCCGTCCCCTGGAAAACGATCAGGTGTCAACAGAT
AAGGCTGCAAGCCTGGGACAGGATTCAGACTCGATACACTTGGAAATCAGCCGAGTCTAG
AGGGGCACTGCCAAAGCCACACAAGGCTTTCAACGGCAGCCTTCCGCTACCCACGGATCA
CCAGCCACATTTGCCCTGTGTCTGCCTGGTAGAACCCACCAGGATTCCGGGATTCGGGAA
AAGAAAAAGAGCAAAGCCAGCTCCTGTGACAAAGGAGCCCTGCTGGGCCGGCTGGGGCTG
AGGCCAGATGCTCGCGGAGACCCGGAGAGTCAGGAGGGCGGGCTCGGCCTCCTCTCCCGT
AAAATGGGAGCACAAAGCCCTCTCTCCTACCTCCCCTGGGGTGTCACGAGGATCAAGCGA
GAAGCTGGGCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCGGGCCCAGGAGCAACAGGAAGTACAGCGGGACGATGGATGCCTACAGGACCATCGCC
AGGGAGGAAGGGGTCCGGGGCCTGTGGAAAGGAATTCTGCCCAACATCACGAGGAATGCC
ATCGTGAACTGTGCCGAGATGGTGACCTATGATGTCATCAAGGAGAAGGTGCTAGACTAC
CACCTGCTCACGGACAACCTGCCCTGGCACTTTGTCTCTGCCTTCGGAGCTGGCTTCTGT
GCCACCGTGGTGGCCTCCCCAGTGGATGTGGTGAAGACCCGGTACATGAACTCGCCCCCC
GGCCAGTACCAGAACCCTCTGGACTGCATGCTGAAGATGGTGACCCAGGAGGGCCCCACA
GCCTTCTATAAAGGATTCACACCTTCCTTTTTGCGCTTGGGAAGCTGGAACGTGGTGATG
TTTGTAAGCTACGAGCAGCTGAAACGGGCCTTGATGAAAGTCCAGATGCTGCGGGAATCT
CCGTTTTGAGTAAGACAAAGCCACCTGGCGTTTCACGAAGGCAAAACCAGCCAAGGGGTG
ACAGGCGCCGCTGTGGGTCTGAGCACATAAGGCCACAGGCCCACCCACATTTACACAATG
GTCTACTTGCCGCCAACTTGGGAAATAGGAGGAGGAGAACTGTGGTCTCCAGTGCTTTAC
CTTCAGTACACGTTCGTGTGGCACTGCCAAGATGCACAATAAATTATATTAATTTGTGAA
ACCCACTAGGATGGATGCCTAACATTTAGGCAAAAGAAGATAAACCAGAATGGATCCATA
TGGATAAAACAGACGTTTGCAAACTTCCGTCCCCTGGAAAACGATCAGGTGTCAACAGAT
AAGGCTGCAAGCCTGGGACAGGATTCAGACTCGATACACTTGGAAATCAGCCGAGTCTAG
AGGGGCACTGCCAAAGCCACACAAGGCTTTCAACGGCAGCCTTCCGCTACCCACGGATCA
CCAGCCACATTTGCCCTGTGTCTGCCTGGTAGAACCCACCAGGATTCCGGGATTCGGGAA
AAGAAAAAGAGCAAAGCCAGCTCCTGTGACAAAGGAGCCCTGCTGGGCCGGCTGGGGCTG
AGGCCAGATGCTCGCGGAGACCCGGAGAGTCAGGAGGGCGGGCTCGGCCTCCTCTCCCGT
AAAATGGGAGCACAAAGCCCTCTCTCCTACCTCCCCTGGGGTGTCACGAGGATCAAGCGA
GAAGCTGGGCAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|47522914|ref|NP_999214.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|47522914|ref|NP_999214.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               678-831, + strand, RNAz p=0.974136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               678-831, + strand, RNAz p=0.974136

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_003356, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_003356, +

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               87-191, gnl|bosTau2|chr15 (33953389-33953285)
               

               
               87-191, gnl|canFam2|chr21 (27289105-27288977)
               

               
               87-191, gnl|danRer3|chr16 (12823892-12824005)
               

               
               87-191, gnl|dasNov1|scaffold_192263 (4880-4753)
               

               
               87-191, gnl|echTel1|scaffold_315570 (96111-95988)
               

               
               87-191, gnl|fr1|chrUn (194144298-194144188)
               

               
               87-191, gnl|hg17|chr11 (73393167-73393294)
               

               
               87-191, gnl|Hg17|chr11 (73393283-73393179)
               

               
               87-191, gnl|loxAfr1|scaffold_135631 (4878-4998)
               

               
               87-191, gnl|mm7|chr7 (96528225-96528098)
               

               
               87-191, gnl|Mm7|chr7 (96528107-96528211)
               

               
               87-191, gnl|monDom2|scaffold_74 (3455633-3455506)
               

               
               87-191, gnl|oryCun1|scaffold_212390 (7481-7608)
               

               
               87-191, gnl|panTro1|chr9 (74675367-74675494)
               

               
               87-191, gnl|rheMac2|chr14 (72186796-72186923)
               

               
               87-191, gnl|rn3|chr1 (157983196-157983074)
               

               
               87-191, gnl|tetNig1|chr7 (5477270-5477393)
               

               
               87-191, gnl|xenTro1|scaffold_1234 (51818-51918)
               


               
               374-955, gnl|bosTau2|chr15 (33950133-33949539)
               

               
               374-955, gnl|Hg17|chr11 (73390220-73389635)
               

               
               374-955, gnl|Mm7|chr7 (96531234-96531762)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               87-191, gnl|bosTau2|chr15 (33953389-33953285)
               

               
               87-191, gnl|canFam2|chr21 (27289105-27288977)
               

               
               87-191, gnl|danRer3|chr16 (12823892-12824005)
               

               
               87-191, gnl|dasNov1|scaffold_192263 (4880-4753)
               

               
               87-191, gnl|echTel1|scaffold_315570 (96111-95988)
               

               
               87-191, gnl|fr1|chrUn (194144298-194144188)
               

               
               87-191, gnl|hg17|chr11 (73393167-73393294)
               

               
               87-191, gnl|Hg17|chr11 (73393283-73393179)
               

               
               87-191, gnl|loxAfr1|scaffold_135631 (4878-4998)
               

               
               87-191, gnl|mm7|chr7 (96528225-96528098)
               

               
               87-191, gnl|Mm7|chr7 (96528107-96528211)
               

               
               87-191, gnl|monDom2|scaffold_74 (3455633-3455506)
               

               
               87-191, gnl|oryCun1|scaffold_212390 (7481-7608)
               

               
               87-191, gnl|panTro1|chr9 (74675367-74675494)
               

               
               87-191, gnl|rheMac2|chr14 (72186796-72186923)
               

               
               87-191, gnl|rn3|chr1 (157983196-157983074)
               

               
               87-191, gnl|tetNig1|chr7 (5477270-5477393)
               

               
               87-191, gnl|xenTro1|scaffold_1234 (51818-51918)
               


               
               374-955, gnl|bosTau2|chr15 (33950133-33949539)
               

               
               374-955, gnl|Hg17|chr11 (73390220-73389635)
               

               
               374-955, gnl|Mm7|chr7 (96531234-96531762)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               che (0.136314)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               che (0.136314)
               

               
               ldo (0.0970026)

	87-191, gnl\|bosTau2\|chr15 (33953389-33953285)
	87-191, gnl\|canFam2\|chr21 (27289105-27288977)
	87-191, gnl\|danRer3\|chr16 (12823892-12824005)
	87-191, gnl\|dasNov1\|scaffold_192263 (4880-4753)
	87-191, gnl\|echTel1\|scaffold_315570 (96111-95988)
	87-191, gnl\|fr1\|chrUn (194144298-194144188)
	87-191, gnl\|hg17\|chr11 (73393167-73393294)
	87-191, gnl\|Hg17\|chr11 (73393283-73393179)
	87-191, gnl\|loxAfr1\|scaffold_135631 (4878-4998)
	87-191, gnl\|mm7\|chr7 (96528225-96528098)
	87-191, gnl\|Mm7\|chr7 (96528107-96528211)
	87-191, gnl\|monDom2\|scaffold_74 (3455633-3455506)
	87-191, gnl\|oryCun1\|scaffold_212390 (7481-7608)
	87-191, gnl\|panTro1\|chr9 (74675367-74675494)
	87-191, gnl\|rheMac2\|chr14 (72186796-72186923)
	87-191, gnl\|rn3\|chr1 (157983196-157983074)
	87-191, gnl\|tetNig1\|chr7 (5477270-5477393)
	87-191, gnl\|xenTro1\|scaffold_1234 (51818-51918)

	374-955, gnl\|bosTau2\|chr15 (33950133-33949539)
	374-955, gnl\|Hg17\|chr11 (73390220-73389635)
	374-955, gnl\|Mm7\|chr7 (96531234-96531762)