Non-Coding RNA Search

Ss1.1-rnep13c_m17.5

Sequence:


               
               GCGGCGCCTGGGCGGCATGCAATGGGGAACTGCTGCTGGACGCAGTGCTTCGGGCTCCTC
CGCAGGGAAGCCGGGCGGCTGCAGCGTGTAGGAGGCGGCGGAGGATCCAAGTATTTTAGA
ACATGCTCAAGAGGTGAGCACTTAACTATAGAGTTTGAGAATCTAGTAGAAAGCGATGAA
GGAGAAAGCCCAGGAAGCAGCCATAGGCCTCTTACTGAAGAAGAAATTGTTGACCTAAGA
GAGAAGCATTATGATTCTATTGTTGAAAAACAGAAAGATCTTGATATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCGCCTGGGCGGCATGCAATGGGGAACTGCTGCTGGACGCAGTGCTTCGGGCTCCTC
CGCAGGGAAGCCGGGCGGCTGCAGCGTGTAGGAGGCGGCGGAGGATCCAAGTATTTTAGA
ACATGCTCAAGAGGTGAGCACTTAACTATAGAGTTTGAGAATCTAGTAGAAAGCGATGAA
GGAGAAAGCCCAGGAAGCAGCCATAGGCCTCTTACTGAAGAAGAAATTGTTGACCTAAGA
GAGAAGCATTATGATTCTATTGTTGAAAAACAGAAAGATCTTGATATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|21753125|dbj|BAC04292.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|21753125|dbj|BAC04292.1|

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               1-104, gnl|bosTau2|chr6 (4636003-4636106)
               

               
               1-104, gnl|canFam2|chr32 (35003431-35004193)
               

               
               1-104, gnl|echTel1|scaffold_281474 (43684-44419)
               

               
               1-104, gnl|galGal2|chr4 (57728945-57728236)
               

               
               1-104, gnl|hg17|chr4 (113510463-113511198)
               

               
               1-104, gnl|Hg17|chr4 (113510831-113510934)
               

               
               1-104, gnl|loxAfr1|scaffold_90102 (8854-8103)
               

               
               1-104, gnl|mm7|chr3 (127676371-127675916)
               

               
               1-104, gnl|Mm7|chr3 (127676123-127676027)
               

               
               1-104, gnl|monDom2|scaffold_9 (81787017-81786266)
               

               
               1-104, gnl|oryCun1|scaffold_205138 (38044-38782)
               

               
               1-104, gnl|panTro1|chr3 (130083714-130084449)
               

               
               1-104, gnl|rheMac2|chr5 (105080002-105080742)
               

               
               1-104, gnl|rn3|chr2 (225104872-225104440)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-104, gnl|bosTau2|chr6 (4636003-4636106)
               

               
               1-104, gnl|canFam2|chr32 (35003431-35004193)
               

               
               1-104, gnl|echTel1|scaffold_281474 (43684-44419)
               

               
               1-104, gnl|galGal2|chr4 (57728945-57728236)
               

               
               1-104, gnl|hg17|chr4 (113510463-113511198)
               

               
               1-104, gnl|Hg17|chr4 (113510831-113510934)
               

               
               1-104, gnl|loxAfr1|scaffold_90102 (8854-8103)
               

               
               1-104, gnl|mm7|chr3 (127676371-127675916)
               

               
               1-104, gnl|Mm7|chr3 (127676123-127676027)
               

               
               1-104, gnl|monDom2|scaffold_9 (81787017-81786266)
               

               
               1-104, gnl|oryCun1|scaffold_205138 (38044-38782)
               

               
               1-104, gnl|panTro1|chr3 (130083714-130084449)
               

               
               1-104, gnl|rheMac2|chr5 (105080002-105080742)
               

               
               1-104, gnl|rn3|chr2 (225104872-225104440)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               elu (0.385356)
               

               
               nep (0.183925)
               

               
               cut (0.169924)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               nep (0.183925)
               

               
               cut (0.169924)
               

               
               ecc (0.115035)

	1-104, gnl\|bosTau2\|chr6 (4636003-4636106)
	1-104, gnl\|canFam2\|chr32 (35003431-35004193)
	1-104, gnl\|echTel1\|scaffold_281474 (43684-44419)
	1-104, gnl\|galGal2\|chr4 (57728945-57728236)
	1-104, gnl\|hg17\|chr4 (113510463-113511198)
	1-104, gnl\|Hg17\|chr4 (113510831-113510934)
	1-104, gnl\|loxAfr1\|scaffold_90102 (8854-8103)
	1-104, gnl\|mm7\|chr3 (127676371-127675916)
	1-104, gnl\|Mm7\|chr3 (127676123-127676027)
	1-104, gnl\|monDom2\|scaffold_9 (81787017-81786266)
	1-104, gnl\|oryCun1\|scaffold_205138 (38044-38782)
	1-104, gnl\|panTro1\|chr3 (130083714-130084449)
	1-104, gnl\|rheMac2\|chr5 (105080002-105080742)
	1-104, gnl\|rn3\|chr2 (225104872-225104440)