Non-Coding RNA Search

Ss1.1-rnep13c_o18.5

Sequence:


               
               TTCATGCCTGAATATTTATAAAACGTTAAACAACACAGATGAACAAACTAGGGTTTGTTC
ATAAATTAGGGTTTTCAGCAATATTACGTTTTCGGCTTTGCCCAGCAATCTTATCATCGG
TTCTCTGTCGCATATTTGTTTCATGTTGTTTCATGCAGTACTGTGCATTTGCAGTAAATT
TGGCCAAGTGTGAGCAAAGAAAGATCTCAGAAGGACAAAGCATGAGGTACAGGAAGCACG
AGAAGAAGAGCTGGTGACAGAGGCTTAGGAGGAAGAAGTGGACCAAAGCAGTGAAGCAGT
CTTACCAGCAGGAGAATGGGTAGCCTCCCACAGCTCCAGGGCAGGGTAGGAACCAGACTC
ACCACCTAGCAGCAGCACTGCTTCTGGCAGCAGCTTTTCTGCTGGCAACAGCCCTTCCCA
CAGCCGCAACCACACGAGTTGCACCTGCAGGTGCGGCGGTAGCAGCAGACCACGGGGGTG
CTGCAGCAGCCCCCACAGCAGCCACAGCAGCAGGGGCAGCAGCCAGAACAGCAGCCCACC
CGGTAGCATCTGCAGCTGGTGCAGCTGTTGCAGCCACCGCAGCCACTGCTGCAGCCACCA
CAGCCACCACTGCAGCCACCACAGCCACCGCTGCAGCCACCGCAACCACCGCAGCCTCCG
CAGCCACCACAACTTCCACAGCCACAGCAGCCCATGGTGTCGTTAGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTCATGCCTGAATATTTATAAAACGTTAAACAACACAGATGAACAAACTAGGGTTTGTTC
ATAAATTAGGGTTTTCAGCAATATTACGTTTTCGGCTTTGCCCAGCAATCTTATCATCGG
TTCTCTGTCGCATATTTGTTTCATGTTGTTTCATGCAGTACTGTGCATTTGCAGTAAATT
TGGCCAAGTGTGAGCAAAGAAAGATCTCAGAAGGACAAAGCATGAGGTACAGGAAGCACG
AGAAGAAGAGCTGGTGACAGAGGCTTAGGAGGAAGAAGTGGACCAAAGCAGTGAAGCAGT
CTTACCAGCAGGAGAATGGGTAGCCTCCCACAGCTCCAGGGCAGGGTAGGAACCAGACTC
ACCACCTAGCAGCAGCACTGCTTCTGGCAGCAGCTTTTCTGCTGGCAACAGCCCTTCCCA
CAGCCGCAACCACACGAGTTGCACCTGCAGGTGCGGCGGTAGCAGCAGACCACGGGGGTG
CTGCAGCAGCCCCCACAGCAGCCACAGCAGCAGGGGCAGCAGCCAGAACAGCAGCCCACC
CGGTAGCATCTGCAGCTGGTGCAGCTGTTGCAGCCACCGCAGCCACTGCTGCAGCCACCA
CAGCCACCACTGCAGCCACCACAGCCACCGCTGCAGCCACCGCAACCACCGCAGCCTCCG
CAGCCACCACAACTTCCACAGCCACAGCAGCCCATGGTGTCGTTAGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9D230_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9D230_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               299-610, - strand, RNAz p=0.998292

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               299-610, - strand, RNAz p=0.998292

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               464-692, - strand, RNAmicro p=0.99968

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               464-692, - strand, RNAmicro p=0.99968

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               189-610, gnl|bosTau2|chr2 (69312435-69312017)
               

               
               189-610, gnl|Hg17|chr2 (228289661-228289130)
               

               
               189-610, gnl|Mm7|chr1 (83122593-83122092)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               189-610, gnl|bosTau2|chr2 (69312435-69312017)
               

               
               189-610, gnl|Hg17|chr2 (228289661-228289130)
               

               
               189-610, gnl|Mm7|chr1 (83122593-83122092)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.7357)
               

               
               ski (0.29347)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.7357)
               

               
               ski (0.29347)

	189-610, gnl\|bosTau2\|chr2 (69312435-69312017)
	189-610, gnl\|Hg17\|chr2 (228289661-228289130)
	189-610, gnl\|Mm7\|chr1 (83122593-83122092)