Non-Coding RNA Search

Ss1.1-rnep15c_g7.5

Sequence:


               
               CGTGAGCGAGCTGGGCCTGGGCTACGCGTCGGACGAGACAGTGCTGTTCCGCTACTGCGC
AGGCGCGTGCGAGGCGGCCGCGCGCGTCTACGACCTGGGGCTGCGGCGCCTGCGCCAGCG
GCGGCGAGTGCGGCGGGAGCGGGTGCGCGCGCAGCCCTGCTGCCGCCCGACGGCTTACGA
GGACGAGGTGTCCTTCCTGGACACGCACAGCCGCTACCACACGGTGCACGAGCTGTCGGC
GCGCGAGTGCGCCTGCGTGTGACCCTACCTCACTGGGCCCGGCGAGATGGTGGCCACGCC
TCCCGTCCCGACGGCACCCACCGTCTGGCCTGGCAAGCCCCACGACGGACTGCCCATGGG
CAGAAGATGCCGTCGAGGCCTCAGGACTCTCGTGATAACTGTACTAAAATAAAGAGTGTA
AAATCGAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTGAGCGAGCTGGGCCTGGGCTACGCGTCGGACGAGACAGTGCTGTTCCGCTACTGCGC
AGGCGCGTGCGAGGCGGCCGCGCGCGTCTACGACCTGGGGCTGCGGCGCCTGCGCCAGCG
GCGGCGAGTGCGGCGGGAGCGGGTGCGCGCGCAGCCCTGCTGCCGCCCGACGGCTTACGA
GGACGAGGTGTCCTTCCTGGACACGCACAGCCGCTACCACACGGTGCACGAGCTGTCGGC
GCGCGAGTGCGCCTGCGTGTGACCCTACCTCACTGGGCCCGGCGAGATGGTGGCCACGCC
TCCCGTCCCGACGGCACCCACCGTCTGGCCTGGCAAGCCCCACGACGGACTGCCCATGGG
CAGAAGATGCCGTCGAGGCCTCAGGACTCTCGTGATAACTGTACTAAAATAAAGAGTGTA
AAATCGAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q9JMC0_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q9JMC0_RAT

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               280-399, - strand, RNAz p=0.696576

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               280-399, - strand, RNAz p=0.696576

Aligned organism(s): 17 entry(ies)

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Aligned organism(s): 17 entry(ies)

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               1-425, gnl|bosTau2|chr7 (13249254-13248830)
               

               
               1-425, gnl|canFam2|chr20 (57173093-57172784)
               

               
               1-425, gnl|danRer3|chrNA (231292426-231292132)
               

               
               1-425, gnl|echTel1|scaffold_308194 (4686-4966)
               

               
               1-425, gnl|fr1|chrUn (101430173-101429864)
               

               
               1-425, gnl|galGal2|chr28 (1934517-1934807)
               

               
               1-425, gnl|hg17|chr19 (5778895-5779207)
               

               
               1-425, gnl|Hg17|chr19 (5778923-5779333)
               

               
               1-425, gnl|loxAfr1|scaffold_72771 (6833-7145)
               

               
               1-425, gnl|mm7|chr17 (54962896-54962594)
               

               
               1-425, gnl|monDom2|scaffold_418 (33258-33548)
               

               
               1-425, gnl|oryCun1|scaffold_147372 (2968-2678)
               

               
               1-425, gnl|panTro1|chr20 (6120475-6120765)
               

               
               1-425, gnl|rheMac2|chr19 (5723358-5723664)
               

               
               1-425, gnl|rn3|chrUn (25029579-25029883)
               

               
               1-425, gnl|tetNig1|chrUn_random (107170690-107170404)
               

               
               1-425, gnl|xenTro1|scaffold_781 (237028-236725)

Aligned organism(s): 17 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-425, gnl|bosTau2|chr7 (13249254-13248830)
               

               
               1-425, gnl|canFam2|chr20 (57173093-57172784)
               

               
               1-425, gnl|danRer3|chrNA (231292426-231292132)
               

               
               1-425, gnl|echTel1|scaffold_308194 (4686-4966)
               

               
               1-425, gnl|fr1|chrUn (101430173-101429864)
               

               
               1-425, gnl|galGal2|chr28 (1934517-1934807)
               

               
               1-425, gnl|hg17|chr19 (5778895-5779207)
               

               
               1-425, gnl|Hg17|chr19 (5778923-5779333)
               

               
               1-425, gnl|loxAfr1|scaffold_72771 (6833-7145)
               

               
               1-425, gnl|mm7|chr17 (54962896-54962594)
               

               
               1-425, gnl|monDom2|scaffold_418 (33258-33548)
               

               
               1-425, gnl|oryCun1|scaffold_147372 (2968-2678)
               

               
               1-425, gnl|panTro1|chr20 (6120475-6120765)
               

               
               1-425, gnl|rheMac2|chr19 (5723358-5723664)
               

               
               1-425, gnl|rn3|chrUn (25029579-25029883)
               

               
               1-425, gnl|tetNig1|chrUn_random (107170690-107170404)
               

               
               1-425, gnl|xenTro1|scaffold_781 (237028-236725)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               eje (0.0988338)

	1-425, gnl\|bosTau2\|chr7 (13249254-13248830)
	1-425, gnl\|canFam2\|chr20 (57173093-57172784)
	1-425, gnl\|danRer3\|chrNA (231292426-231292132)
	1-425, gnl\|echTel1\|scaffold_308194 (4686-4966)
	1-425, gnl\|fr1\|chrUn (101430173-101429864)
	1-425, gnl\|galGal2\|chr28 (1934517-1934807)
	1-425, gnl\|hg17\|chr19 (5778895-5779207)
	1-425, gnl\|Hg17\|chr19 (5778923-5779333)
	1-425, gnl\|loxAfr1\|scaffold_72771 (6833-7145)
	1-425, gnl\|mm7\|chr17 (54962896-54962594)
	1-425, gnl\|monDom2\|scaffold_418 (33258-33548)
	1-425, gnl\|oryCun1\|scaffold_147372 (2968-2678)
	1-425, gnl\|panTro1\|chr20 (6120475-6120765)
	1-425, gnl\|rheMac2\|chr19 (5723358-5723664)
	1-425, gnl\|rn3\|chrUn (25029579-25029883)
	1-425, gnl\|tetNig1\|chrUn_random (107170690-107170404)
	1-425, gnl\|xenTro1\|scaffold_781 (237028-236725)