Non-Coding RNA Search

Ss1.1-rnep16c_e13.5

Sequence:


               
               CAGCTCGTCCTCCTACCGGGCAGGGGGCAAAGGGCTCAGTGGAGGCTTCGGAAGCCGGAG
CTTGTACAACCTGGGCGGCATCCGGAGCATCTCCTTCAACATGGCCAACAGCACCGGAAA
GAGTGGAGGCTATGGATTTGGCCGGGGCCGGGCCAGTGGCTTTGCTGGCAGCATGTTTGG
CAGCGTGGCCCTGGGACCTGTGTGCCCAACTGTGTGCCCACCTGGAGGCATCCACCAGGT
CACCGTCAATGAGAGCCTCCTGGCCCCCCTCAACGTGGAGCTGGACCCTGAGATCCAGAA
AGTGCGTGCCCAGGAGCGGGAGCAGATCAAGGCACTGAACAACAAGTTTGCCTCCTTTAT
TGACAAGGTGCGGTTCCTGGAGCAGCAGAACCAGGTGCTGGAGACCAAGTGGGAGCTGCT
GCAGCAGCTGGACCTGAACAACTGTAAGAACAACCTGGAGCCCATCCTCGAGGGCTACAT
CAGCACCCTGAGGAAGCAGCTGGAGGCACTGTCCGGGGATAGGGTGAGGCTGGACTCAGA
GCTGAGGAGCGTGCGAGACGTGGTGGAGGACTACAAGAAGAGGTATGAGGAAGAAATCAA
CAGGCGGACGGCGGCAGAGAACGAGTTTGTACTGCTCAAGAAGGATGTGGATGCAGCCTA
TGCCAATAAGGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGCTCGTCCTCCTACCGGGCAGGGGGCAAAGGGCTCAGTGGAGGCTTCGGAAGCCGGAG
CTTGTACAACCTGGGCGGCATCCGGAGCATCTCCTTCAACATGGCCAACAGCACCGGAAA
GAGTGGAGGCTATGGATTTGGCCGGGGCCGGGCCAGTGGCTTTGCTGGCAGCATGTTTGG
CAGCGTGGCCCTGGGACCTGTGTGCCCAACTGTGTGCCCACCTGGAGGCATCCACCAGGT
CACCGTCAATGAGAGCCTCCTGGCCCCCCTCAACGTGGAGCTGGACCCTGAGATCCAGAA
AGTGCGTGCCCAGGAGCGGGAGCAGATCAAGGCACTGAACAACAAGTTTGCCTCCTTTAT
TGACAAGGTGCGGTTCCTGGAGCAGCAGAACCAGGTGCTGGAGACCAAGTGGGAGCTGCT
GCAGCAGCTGGACCTGAACAACTGTAAGAACAACCTGGAGCCCATCCTCGAGGGCTACAT
CAGCACCCTGAGGAAGCAGCTGGAGGCACTGTCCGGGGATAGGGTGAGGCTGGACTCAGA
GCTGAGGAGCGTGCGAGACGTGGTGGAGGACTACAAGAAGAGGTATGAGGAAGAAATCAA
CAGGCGGACGGCGGCAGAGAACGAGTTTGTACTGCTCAAGAAGGATGTGGATGCAGCCTA
TGCCAATAAGGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61888216|ref|XP_611783.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61888216|ref|XP_611783.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               121-280, + strand, RNAz p=0.863224

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               121-280, + strand, RNAz p=0.863224

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-370, gnl|bosTau2|chr5 (20062920-20062551)
               

               
               1-370, gnl|Hg17|chr12 (51233048-51232685)
               

               
               1-370, gnl|Mm7|chr15 (101729126-101728757)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-370, gnl|bosTau2|chr5 (20062920-20062551)
               

               
               1-370, gnl|Hg17|chr12 (51233048-51232685)
               

               
               1-370, gnl|Mm7|chr15 (101729126-101728757)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (1.10355)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (1.10355)

	1-370, gnl\|bosTau2\|chr5 (20062920-20062551)
	1-370, gnl\|Hg17\|chr12 (51233048-51232685)
	1-370, gnl\|Mm7\|chr15 (101729126-101728757)