Ss1.1-rnep16c_i1.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGCCTGAGTACCCGATTACTTTGCGTTCTCCGCTGGTTGTCCACAGGCTTCTGGCCT GGGTTTGGGGCCGTTATGGGGAAGGTGAATGTGGCCAAGTTGCGTTATATGAGCCGGGAT GACTTCAGGGTCCTGACCGCGGTTGAAATGGGCATGAAGAACCATGAAATTGTTCCCTGC AGTTTGGTTGCTTCTATAGCCAGCCTTAAACATGGTGGTTGTAATAAAGTTTTAAGAGAA CTGGTAAAACATAAACTCATAGCTTGGGAGCGAACTAAAACTGTCCAAGGTTATCGGTTG ACAAATGCAGGCTATGATTACCTTGCTTTGAAAACACTTTCTTCTAGACAGGTGGTTGAA TCTGTTGGAAACCAGATGGGTGTTGGCAAAGAATCGGATATTTACATTGTTGCCAATGAA GAAGGGCAGCAGTTTGCATTAAAGCTTCACAGACTGGGAAGAACCTCCTTTCGAAATCTG AAAAATAAGCGTGATTACCATAAACATAGGCATAACATGTCTTGGCTTTATTTATCTCGT CTCTCTGCCATGAAAGAATTTGCTTATATGAAGGCATTGTATGAAAGGAAATTTCCAGTT CCAAAGCCAATTGATTATAATCGCCATGCAGTGGTCATGGAACTCATAAATGGCTATCCT CTATGTCAGATACACCATGTTGAAGATCCCTCATCAGTATATGATGAAGCTATGGAACTA ATTGTTAAACTTGCAAATCATGGACTAATTCATGGAGATTTCAATGAATTCAATCTCATT TTGGATAAAGATGACCACATCACCATGATAGATTTTCCACAAATGGTTTCAACATCTCAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGCCTGAGTACCCGATTACTTTGCGTTCTCCGCTGGTTGTCCACAGGCTTCTGGCCT GGGTTTGGGGCCGTTATGGGGAAGGTGAATGTGGCCAAGTTGCGTTATATGAGCCGGGAT GACTTCAGGGTCCTGACCGCGGTTGAAATGGGCATGAAGAACCATGAAATTGTTCCCTGC AGTTTGGTTGCTTCTATAGCCAGCCTTAAACATGGTGGTTGTAATAAAGTTTTAAGAGAA CTGGTAAAACATAAACTCATAGCTTGGGAGCGAACTAAAACTGTCCAAGGTTATCGGTTG ACAAATGCAGGCTATGATTACCTTGCTTTGAAAACACTTTCTTCTAGACAGGTGGTTGAA TCTGTTGGAAACCAGATGGGTGTTGGCAAAGAATCGGATATTTACATTGTTGCCAATGAA GAAGGGCAGCAGTTTGCATTAAAGCTTCACAGACTGGGAAGAACCTCCTTTCGAAATCTG AAAAATAAGCGTGATTACCATAAACATAGGCATAACATGTCTTGGCTTTATTTATCTCGT CTCTCTGCCATGAAAGAATTTGCTTATATGAAGGCATTGTATGAAAGGAAATTTCCAGTT CCAAAGCCAATTGATTATAATCGCCATGCAGTGGTCATGGAACTCATAAATGGCTATCCT CTATGTCAGATACACCATGTTGAAGATCCCTCATCAGTATATGATGAAGCTATGGAACTA ATTGTTAAACTTGCAAATCATGGACTAATTCATGGAGATTTCAATGAATTCAATCTCATT TTGGATAAAGATGACCACATCACCATGATAGATTTTCCACAAATGGTTTCAACATCTCAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 163-280, + strand, RNAz p=0.988384 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 163-280, + strand, RNAz p=0.988384 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of BC000953, + |
| Aligned organism(s): 52 entry(ies) | More info |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
| 141-280, gnl|bosTau2|chr7 (60106116-60105977) | |
| 141-280, gnl|canFam2|chr3 (15435217-15435039) | |
| 141-280, gnl|danRer3|chr5 (49362170-49362002) | |
| 141-280, gnl|dasNov1|scaffold_87535 (6624-6448) | |
| 141-280, gnl|fr1|chrUn (197838314-197838137) | |
| 141-280, gnl|galGal2|chrZ (23597345-23597161) | |
| 141-280, gnl|hg17|chr5 (96540485-96540661) | |
| 141-280, gnl|Hg17|chr5 (96540654-96540515) | |
| 141-280, gnl|loxAfr1|scaffold_182609 (1335-1159) | |
| 141-280, gnl|mm7|chr17 (15548999-15548824) | |
| 141-280, gnl|Mm7|chr17 (15548829-15548968) | |
| 141-280, gnl|monDom2|scaffold_93 (472851-473028) | |
| 141-280, gnl|oryCun1|scaffold_189548 (6103-6283) | |
| 141-280, gnl|panTro1|chr4 (102305411-102305587) | |
| 141-280, gnl|rheMac2|chr6 (93391857-93392033) | |
| 141-280, gnl|rn3|chr1 (55903390-55903215) | |
| 141-280, gnl|xenTro1|scaffold_45 (998167-997991) | |
| 397-574, gnl|bosTau2|chr7 (60099407-60099230) | |
| 397-574, gnl|canFam2|chr3 (15437848-15437673) | |
| 397-574, gnl|danRer3|chr5 (49362636-49362465) | |
| 397-574, gnl|echTel1|scaffold_103563 (3702-3878) | |
| 397-574, gnl|fr1|chrUn (197838779-197838608) | |
| 397-574, gnl|galGal2|chrZ (23599307-23599136) | |
| 397-574, gnl|hg17|chr5 (96538569-96538745) | |
| 397-574, gnl|Hg17|chr5 (96538752-96538575) | |
| 397-574, gnl|mm7|chr17 (15552106-15551931) | |
| 397-574, gnl|Mm7|chr17 (15551922-15552099) | |
| 397-574, gnl|monDom2|scaffold_93 (467884-468059) | |
| 397-574, gnl|oryCun1|scaffold_189548 (1001-1176) | |
| 397-574, gnl|panTro1|chr4 (102303463-102303639) | |
| 397-574, gnl|rheMac2|chr6 (93389880-93390056) | |
| 397-574, gnl|rn3|chr1 (55905307-55905132) | |
| 397-574, gnl|tetNig1|chr12 (3092179-3092008) | |
| 397-574, gnl|xenTro1|scaffold_45 (999637-999461) | |
| 663-840, gnl|bosTau2|chr7 (60094161-60093984) | |
| 663-840, gnl|canFam2|chr3 (15442957-15442731) | |
| 663-840, gnl|danRer3|chr5 (49363185-49362978) | |
| 663-840, gnl|dasNov1|scaffold_126951 (1726-1959) | |
| 663-840, gnl|fr1|chrUn (197839235-197839021) | |
| 663-840, gnl|galGal2|chrZ (23601852-23601632) | |
| 663-840, gnl|hg17|chr5 (96532624-96532891) | |
| 663-840, gnl|Hg17|chr5 (96532857-96532680) | |
| 663-840, gnl|loxAfr1|scaffold_56753 (6000-5750) | |
| 663-840, gnl|mm7|chr17 (15556188-15555974) | |
| 663-840, gnl|Mm7|chr17 (15555995-15556172) | |
| 663-840, gnl|monDom2|scaffold_93 (466924-467157) | |
| 663-840, gnl|oryCun1|scaffold_184137 (166322-166569) | |
| 663-840, gnl|panTro1|chr4 (102297520-102297786) | |
| 663-840, gnl|rheMac2|chr6 (93383521-93383788) | |
| 663-840, gnl|rn3|chr1 (55908621-55908408) | |
| 663-840, gnl|tetNig1|chr12 (3092620-3092420) | |
| 663-840, gnl|xenTro1|scaffold_45 (1002968-1002682) |
| Aligned organism(s): 52 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 141-280, gnl|bosTau2|chr7 (60106116-60105977) | |
| 141-280, gnl|canFam2|chr3 (15435217-15435039) | |
| 141-280, gnl|danRer3|chr5 (49362170-49362002) | |
| 141-280, gnl|dasNov1|scaffold_87535 (6624-6448) | |
| 141-280, gnl|fr1|chrUn (197838314-197838137) | |
| 141-280, gnl|galGal2|chrZ (23597345-23597161) | |
| 141-280, gnl|hg17|chr5 (96540485-96540661) | |
| 141-280, gnl|Hg17|chr5 (96540654-96540515) | |
| 141-280, gnl|loxAfr1|scaffold_182609 (1335-1159) | |
| 141-280, gnl|mm7|chr17 (15548999-15548824) | |
| 141-280, gnl|Mm7|chr17 (15548829-15548968) | |
| 141-280, gnl|monDom2|scaffold_93 (472851-473028) | |
| 141-280, gnl|oryCun1|scaffold_189548 (6103-6283) | |
| 141-280, gnl|panTro1|chr4 (102305411-102305587) | |
| 141-280, gnl|rheMac2|chr6 (93391857-93392033) | |
| 141-280, gnl|rn3|chr1 (55903390-55903215) | |
| 141-280, gnl|xenTro1|scaffold_45 (998167-997991) | |
| 397-574, gnl|bosTau2|chr7 (60099407-60099230) | |
| 397-574, gnl|canFam2|chr3 (15437848-15437673) | |
| 397-574, gnl|danRer3|chr5 (49362636-49362465) | |
| 397-574, gnl|echTel1|scaffold_103563 (3702-3878) | |
| 397-574, gnl|fr1|chrUn (197838779-197838608) | |
| 397-574, gnl|galGal2|chrZ (23599307-23599136) | |
| 397-574, gnl|hg17|chr5 (96538569-96538745) | |
| 397-574, gnl|Hg17|chr5 (96538752-96538575) | |
| 397-574, gnl|mm7|chr17 (15552106-15551931) | |
| 397-574, gnl|Mm7|chr17 (15551922-15552099) | |
| 397-574, gnl|monDom2|scaffold_93 (467884-468059) | |
| 397-574, gnl|oryCun1|scaffold_189548 (1001-1176) | |
| 397-574, gnl|panTro1|chr4 (102303463-102303639) | |
| 397-574, gnl|rheMac2|chr6 (93389880-93390056) | |
| 397-574, gnl|rn3|chr1 (55905307-55905132) | |
| 397-574, gnl|tetNig1|chr12 (3092179-3092008) | |
| 397-574, gnl|xenTro1|scaffold_45 (999637-999461) | |
| 663-840, gnl|bosTau2|chr7 (60094161-60093984) | |
| 663-840, gnl|canFam2|chr3 (15442957-15442731) | |
| 663-840, gnl|danRer3|chr5 (49363185-49362978) | |
| 663-840, gnl|dasNov1|scaffold_126951 (1726-1959) | |
| 663-840, gnl|fr1|chrUn (197839235-197839021) | |
| 663-840, gnl|galGal2|chrZ (23601852-23601632) | |
| 663-840, gnl|hg17|chr5 (96532624-96532891) | |
| 663-840, gnl|Hg17|chr5 (96532857-96532680) | |
| 663-840, gnl|loxAfr1|scaffold_56753 (6000-5750) | |
| 663-840, gnl|mm7|chr17 (15556188-15555974) | |
| 663-840, gnl|Mm7|chr17 (15555995-15556172) | |
| 663-840, gnl|monDom2|scaffold_93 (466924-467157) | |
| 663-840, gnl|oryCun1|scaffold_184137 (166322-166569) | |
| 663-840, gnl|panTro1|chr4 (102297520-102297786) | |
| 663-840, gnl|rheMac2|chr6 (93383521-93383788) | |
| 663-840, gnl|rn3|chr1 (55908621-55908408) | |
| 663-840, gnl|tetNig1|chr12 (3092620-3092420) | |
| 663-840, gnl|xenTro1|scaffold_45 (1002968-1002682) |
| Expressed library(ies): 3 entry(ies) | More info |
| Expressed library(ies): 3 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.20816) | |
| nep (0.183925) | |
| ese (0.126502) |