Non-Coding RNA Search

Ss1.1-rnep18c_g3.5

Sequence:


               
               AACTCCATCTCCCAAAAAAGCTTCAGCTACCCGCCCTCCTAAAAGAGACTCCACTTCCCT
GGCTGTGGCTCCTCCCTCACCCAAAGAGGCCCCAGCAACTCCACTCAGAGGAGCCTCCAC
TCCCCTAGATGTGGCTCCTTCCTCTCCAAAAGGGGGCCCAGCAACTCCATCTCCCAAAAG
AGCCCCAGCTATCCCACCTCCCAAAGGAGACCTTATTCCCCTATCTGTGGCCCTTCCCTC
CCCCAAAACAGCTTCAACATCTCTTTCCCCCAAAGAGGCCCCCATTCCCTCAGCTGTGGC
TCCTTCCTCCCCCAAGAGAGCCTCAGCAAGCCCAACCTCCAAAGGAGCCCCAGCTACCCC
ATTCCCCAAAAGGGGCCCAGCCACTTCATCCTCCAAGGGGGCTCCCATTCCCCCAGCTAT
GACTCCTCCCTCCCCCAAAGAGGCCCCTACTTCCCCAGTTTCAGTCACATGTCCCTTGGG
GTCCACTGCTCCTCAGGCATCTAAAGAACTCCCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACTCCATCTCCCAAAAAAGCTTCAGCTACCCGCCCTCCTAAAAGAGACTCCACTTCCCT
GGCTGTGGCTCCTCCCTCACCCAAAGAGGCCCCAGCAACTCCACTCAGAGGAGCCTCCAC
TCCCCTAGATGTGGCTCCTTCCTCTCCAAAAGGGGGCCCAGCAACTCCATCTCCCAAAAG
AGCCCCAGCTATCCCACCTCCCAAAGGAGACCTTATTCCCCTATCTGTGGCCCTTCCCTC
CCCCAAAACAGCTTCAACATCTCTTTCCCCCAAAGAGGCCCCCATTCCCTCAGCTGTGGC
TCCTTCCTCCCCCAAGAGAGCCTCAGCAAGCCCAACCTCCAAAGGAGCCCCAGCTACCCC
ATTCCCCAAAAGGGGCCCAGCCACTTCATCCTCCAAGGGGGCTCCCATTCCCCCAGCTAT
GACTCCTCCCTCCCCCAAAGAGGCCCCTACTTCCCCAGTTTCAGTCACATGTCCCTTGGG
GTCCACTGCTCCTCAGGCATCTAAAGAACTCCCAGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               357-514, gnl|bosTau2|chr5 (33050697-33050854)
               

               
               357-514, gnl|Hg17|chr12 (55396743-55396562)
               

               
               357-514, gnl|Mm7|chr10 (127545503-127545819)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               357-514, gnl|bosTau2|chr5 (33050697-33050854)
               

               
               357-514, gnl|Hg17|chr12 (55396743-55396562)
               

               
               357-514, gnl|Mm7|chr10 (127545503-127545819)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mas (0.210305)
               

               
               nep (0.183925)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mas (0.210305)
               

               
               nep (0.183925)

	357-514, gnl\|bosTau2\|chr5 (33050697-33050854)
	357-514, gnl\|Hg17\|chr12 (55396743-55396562)
	357-514, gnl\|Mm7\|chr10 (127545503-127545819)