Ss1.1-rnep18c_h9.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGTGTCCGTGTTCTCTTGCCTCAGCCTTGCCTGCTCCTACGTGGGCAGCCTCTACGTGT GGAAGAGCGAGCTGCCCAGGGACCACCCTGCCGTCATCAAGCGGCGCTTCACCAGTGTCC TGGTGGTGTCAAGTCTCTCGCCCCTCTGCGTGCTACTCTGGAGGGAACTTACAGGCATCC AGCCAGGCACATCCCTGCTCACCCTGATGGGATTCAGGCTGGAGGGCATTTTTCCAGCAG CGCTGCTGCCCCTGCTGCTGACCATGATCCTTTTCCTGGGGCCACTGATGCAGCTGTCTA TGGATTGTTCCTGTGACCTGGCAGATGGGTTGAAGGTTGTTCTAGCACCTCGCTCCTGGG CTCGCTGCCTCACAGACATGCGTTGGCTGCGGAACCAAGTGATCGCACCCCTGACAGAAG AGCTGGTGTTCCGGGCCTGCATGCTGCCCATGTTAGCACCGTGCACAGGCCTGGGCCCTG CTGTGTTCACCTGCCCACTCTTCTTTGGAGTTGCCCATTTTCATCACATTTTTGAGCAGC TTCGTTTCCGCCAGAGCAGCGTGGGGAGCATCTTCTTGTCTGCAGCGTTCCAGTTCTCCT ACACAGCTGTCTTCGGTGCCTACACTGCTTTCCTCTTCATCCGTACAGGACACCTGATTG GGCCAGTTCTCTGCCACTCTTTCTGCAATTACATGGGCTTTCCTGCCGTGTGTGCAGCCC TGGAGCATCCACAGAGGCGCCCCCTGCTGGCAGGCTACGCCCTGGGTGTGGGACTCTTCC TTCTTCTGCTCCAGCCCCTCACGGACCCTAAGCTCTACGGCAGCCTCCCCCTTTGTGTGC TTTTGGAGCGGGCCGGGGACTCAGAGGCTCCACTGTGCTCCTGACCCATGCTCCTGTACA CACGCCTATGGACTCATGGGCTTCCCAGCCCCTCCCCATCAAGGGGTACTGCAGGGGAGG AGCTGGCTGAGGTCCCGAGAACTCAGGAATTTTTGTAGGGGATCGAAGCCAGAGCTAGTT GACTCCCAGGGACCAAGAGAAAGAAGCAGATATCCAAAGGGTGCGGTCCCTCTTAAAAGG GGGTTGAGGAGCAGCTGGGGGTGAGGGGGCAAGGGGCAGGTCCCAGGAGCTGGGCACTCC CTTCCTCACTGGACTGCTGCTTCTCTGAGCTCCTCTGCCGCTCCCATCCCCACCCCCCAC CTCTGAAAAGCTGCTCGGGGGTGGAATTTACAAAAGCCCTCCCCCCAACTTCCCAGGGTT TTCTCATTGTCTTTTTGCATCAGGACTTTGTATTGGGATATTAAAGAGATTTAACTTGGG TAACACGGCCTTGGACCTTTGGGAATCTGCCTATTCAGAGTCTTGGGAGTGTGCCCACCA CTGTCCCGGCTAGTGTGAGCACTGACCCCTAGGCAGGTCGGCCTGCAGTAACGGACAGGA CGGGGGCTTCTGGCTACCCCTCAGTCTCTAGCTTCCTCCTTCCTGAACCAGGACCCAGGT CCTAGCACAGATGATCCTGGAACTGTTGGTACCAGGTATGGGCCCAGCTCTTCCTGGGAC CTGTGTCTGTCTTCAGGATCAGGAGCAGGGAGAGGGACCCAGGGCCCTGACCCCAGTGAT GGAGCCTCCATCCTCTGACCTTTGATAGGTGGACCCTTCGCTCTGTGCCTTCCACAGAAA GTCTGCCAGCCTCACCTCACACAGGAGGAAACAAATCTAAGATGGAAGAGGAACCGGCTC GGTCACCTGGGAGTGGAGGCTTTTCTGGCTCTCTCCACCTCAGACCGCTGTCACGATGCC ACTTCTTTGGTTCCTGGAGGAACCCAGCCCAAAGGCTCAGAGCATGAGCAACCCTGCCAC GCAACACTGGAACTCAAGGTTTTTTTCTAGAATCTGGTAGTGTTTACGTGCTCTTCCTGT TCTTAGAATGGTTTCTATGTTCTCATTCCCCTGCCTCTATGCCGTCCCCCCCTTTAGCGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGTGTCCGTGTTCTCTTGCCTCAGCCTTGCCTGCTCCTACGTGGGCAGCCTCTACGTGT GGAAGAGCGAGCTGCCCAGGGACCACCCTGCCGTCATCAAGCGGCGCTTCACCAGTGTCC TGGTGGTGTCAAGTCTCTCGCCCCTCTGCGTGCTACTCTGGAGGGAACTTACAGGCATCC AGCCAGGCACATCCCTGCTCACCCTGATGGGATTCAGGCTGGAGGGCATTTTTCCAGCAG CGCTGCTGCCCCTGCTGCTGACCATGATCCTTTTCCTGGGGCCACTGATGCAGCTGTCTA TGGATTGTTCCTGTGACCTGGCAGATGGGTTGAAGGTTGTTCTAGCACCTCGCTCCTGGG CTCGCTGCCTCACAGACATGCGTTGGCTGCGGAACCAAGTGATCGCACCCCTGACAGAAG AGCTGGTGTTCCGGGCCTGCATGCTGCCCATGTTAGCACCGTGCACAGGCCTGGGCCCTG CTGTGTTCACCTGCCCACTCTTCTTTGGAGTTGCCCATTTTCATCACATTTTTGAGCAGC TTCGTTTCCGCCAGAGCAGCGTGGGGAGCATCTTCTTGTCTGCAGCGTTCCAGTTCTCCT ACACAGCTGTCTTCGGTGCCTACACTGCTTTCCTCTTCATCCGTACAGGACACCTGATTG GGCCAGTTCTCTGCCACTCTTTCTGCAATTACATGGGCTTTCCTGCCGTGTGTGCAGCCC TGGAGCATCCACAGAGGCGCCCCCTGCTGGCAGGCTACGCCCTGGGTGTGGGACTCTTCC TTCTTCTGCTCCAGCCCCTCACGGACCCTAAGCTCTACGGCAGCCTCCCCCTTTGTGTGC TTTTGGAGCGGGCCGGGGACTCAGAGGCTCCACTGTGCTCCTGACCCATGCTCCTGTACA CACGCCTATGGACTCATGGGCTTCCCAGCCCCTCCCCATCAAGGGGTACTGCAGGGGAGG AGCTGGCTGAGGTCCCGAGAACTCAGGAATTTTTGTAGGGGATCGAAGCCAGAGCTAGTT GACTCCCAGGGACCAAGAGAAAGAAGCAGATATCCAAAGGGTGCGGTCCCTCTTAAAAGG GGGTTGAGGAGCAGCTGGGGGTGAGGGGGCAAGGGGCAGGTCCCAGGAGCTGGGCACTCC CTTCCTCACTGGACTGCTGCTTCTCTGAGCTCCTCTGCCGCTCCCATCCCCACCCCCCAC CTCTGAAAAGCTGCTCGGGGGTGGAATTTACAAAAGCCCTCCCCCCAACTTCCCAGGGTT TTCTCATTGTCTTTTTGCATCAGGACTTTGTATTGGGATATTAAAGAGATTTAACTTGGG TAACACGGCCTTGGACCTTTGGGAATCTGCCTATTCAGAGTCTTGGGAGTGTGCCCACCA CTGTCCCGGCTAGTGTGAGCACTGACCCCTAGGCAGGTCGGCCTGCAGTAACGGACAGGA CGGGGGCTTCTGGCTACCCCTCAGTCTCTAGCTTCCTCCTTCCTGAACCAGGACCCAGGT CCTAGCACAGATGATCCTGGAACTGTTGGTACCAGGTATGGGCCCAGCTCTTCCTGGGAC CTGTGTCTGTCTTCAGGATCAGGAGCAGGGAGAGGGACCCAGGGCCCTGACCCCAGTGAT GGAGCCTCCATCCTCTGACCTTTGATAGGTGGACCCTTCGCTCTGTGCCTTCCACAGAAA GTCTGCCAGCCTCACCTCACACAGGAGGAAACAAATCTAAGATGGAAGAGGAACCGGCTC GGTCACCTGGGAGTGGAGGCTTTTCTGGCTCTCTCCACCTCAGACCGCTGTCACGATGCC ACTTCTTTGGTTCCTGGAGGAACCCAGCCCAAAGGCTCAGAGCATGAGCAACCCTGCCAC GCAACACTGGAACTCAAGGTTTTTTTCTAGAATCTGGTAGTGTTTACGTGCTCTTCCTGT TCTTAGAATGGTTTCTATGTTCTCATTCCCCTGCCTCTATGCCGTCCCCCCCTTTAGCGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 396-513, + strand, RNAz p=0.710372 | |
| 646-1345, - strand, RNAz p=0.992399 | |
| 1505-1622, + strand, RNAz p=0.747749 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 396-513, + strand, RNAz p=0.710372 | |
| 646-1345, - strand, RNAz p=0.992399 | |
| 1505-1622, + strand, RNAz p=0.747749 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 78-182, gnl|bosTau2|chr29 (36680633-36680529) | |
| 78-182, gnl|canFam2|chr18 (53538355-53538233) | |
| 78-182, gnl|danRer3|chr7 (8660341-8660235) | |
| 78-182, gnl|dasNov1|scaffold_235561 (1146-1270) | |
| 78-182, gnl|echTel1|scaffold_201833 (3960-4080) | |
| 78-182, gnl|fr1|chrUn (190804871-190804753) | |
| 78-182, gnl|hg17|chr11 (66367795-66367917) | |
| 78-182, gnl|Hg17|chr11 (66367804-66367908) | |
| 78-182, gnl|loxAfr1|scaffold_231827 (88-209) | |
| 78-182, gnl|mm7|chr19 (4520114-4519992) | |
| 78-182, gnl|Mm7|chr19 (4520103-4519999) | |
| 78-182, gnl|monDom2|scaffold_107 (2193791-2193669) | |
| 78-182, gnl|oryCun1|scaffold_149015 (1127-1006) | |
| 78-182, gnl|panTro1|chr9 (67619105-67619227) | |
| 78-182, gnl|rheMac2|chr14 (7611032-7610910) | |
| 78-182, gnl|rn3|chr1 (207369944-207369822) | |
| 78-182, gnl|tetNig1|chrUn_random (15024304-15024191) | |
| 78-182, gnl|xenTro1|scaffold_502 (646979-646866) | |
| 342-513, gnl|bosTau2|chr29 (36679530-36679359) | |
| 342-513, gnl|canFam2|chr18 (53537226-53537026) | |
| 342-513, gnl|danRer3|chr7 (8656623-8656426) | |
| 342-513, gnl|dasNov1|scaffold_15956 (9636-9834) | |
| 342-513, gnl|fr1|chrUn (190804257-190804076) | |
| 342-513, gnl|hg17|chr11 (66368893-66369090) | |
| 342-513, gnl|Hg17|chr11 (66368912-66369083) | |
| 342-513, gnl|mm7|chr19 (4519012-4518815) | |
| 342-513, gnl|Mm7|chr19 (4518991-4518820) | |
| 342-513, gnl|monDom2|scaffold_107 (2192526-2192334) | |
| 342-513, gnl|oryCun1|scaffold_109818 (4184-4351) | |
| 342-513, gnl|panTro1|chr9 (67620204-67620401) | |
| 342-513, gnl|rheMac2|chr14 (7609943-7609746) | |
| 342-513, gnl|rn3|chr1 (207368806-207368609) | |
| 342-513, gnl|tetNig1|chrUn_random (15022704-15022522) | |
| 342-513, gnl|xenTro1|scaffold_502 (641602-641425) | |
| 646-1972, gnl|bosTau2|chr29 (36678547-36677248) | |
| 646-1972, gnl|Hg17|chr11 (66369904-66371201) | |
| 646-1972, gnl|Mm7|chr19 (4518051-4516890) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 78-182, gnl|bosTau2|chr29 (36680633-36680529) | |
| 78-182, gnl|canFam2|chr18 (53538355-53538233) | |
| 78-182, gnl|danRer3|chr7 (8660341-8660235) | |
| 78-182, gnl|dasNov1|scaffold_235561 (1146-1270) | |
| 78-182, gnl|echTel1|scaffold_201833 (3960-4080) | |
| 78-182, gnl|fr1|chrUn (190804871-190804753) | |
| 78-182, gnl|hg17|chr11 (66367795-66367917) | |
| 78-182, gnl|Hg17|chr11 (66367804-66367908) | |
| 78-182, gnl|loxAfr1|scaffold_231827 (88-209) | |
| 78-182, gnl|mm7|chr19 (4520114-4519992) | |
| 78-182, gnl|Mm7|chr19 (4520103-4519999) | |
| 78-182, gnl|monDom2|scaffold_107 (2193791-2193669) | |
| 78-182, gnl|oryCun1|scaffold_149015 (1127-1006) | |
| 78-182, gnl|panTro1|chr9 (67619105-67619227) | |
| 78-182, gnl|rheMac2|chr14 (7611032-7610910) | |
| 78-182, gnl|rn3|chr1 (207369944-207369822) | |
| 78-182, gnl|tetNig1|chrUn_random (15024304-15024191) | |
| 78-182, gnl|xenTro1|scaffold_502 (646979-646866) | |
| 342-513, gnl|bosTau2|chr29 (36679530-36679359) | |
| 342-513, gnl|canFam2|chr18 (53537226-53537026) | |
| 342-513, gnl|danRer3|chr7 (8656623-8656426) | |
| 342-513, gnl|dasNov1|scaffold_15956 (9636-9834) | |
| 342-513, gnl|fr1|chrUn (190804257-190804076) | |
| 342-513, gnl|hg17|chr11 (66368893-66369090) | |
| 342-513, gnl|Hg17|chr11 (66368912-66369083) | |
| 342-513, gnl|mm7|chr19 (4519012-4518815) | |
| 342-513, gnl|Mm7|chr19 (4518991-4518820) | |
| 342-513, gnl|monDom2|scaffold_107 (2192526-2192334) | |
| 342-513, gnl|oryCun1|scaffold_109818 (4184-4351) | |
| 342-513, gnl|panTro1|chr9 (67620204-67620401) | |
| 342-513, gnl|rheMac2|chr14 (7609943-7609746) | |
| 342-513, gnl|rn3|chr1 (207368806-207368609) | |
| 342-513, gnl|tetNig1|chrUn_random (15022704-15022522) | |
| 342-513, gnl|xenTro1|scaffold_502 (641602-641425) | |
| 646-1972, gnl|bosTau2|chr29 (36678547-36677248) | |
| 646-1972, gnl|Hg17|chr11 (66369904-66371201) | |
| 646-1972, gnl|Mm7|chr19 (4518051-4516890) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| nep (0.36785) | |
| cag (0.302389) | |
| ece (0.229305) | |
| nje (0.16592) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| cty (0.10408) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.36785) | |
| cag (0.302389) | |
| ece (0.229305) | |
| nje (0.16592) | |
| hlv (0.139256) | |
| cov (0.132153) | |
| cty (0.10408) |