Non-Coding RNA Search

Ss1.1-rnep18c_i10.5

Sequence:


               
               GTTTGGTAGGCGGAGAGTTACCAAGCCCACGGACCGGAAGGGGGGGAGGGCGGAGCGGGG
CCGGCCGGCCTCGCCCCCTATGATCAGCTGTCTTGTGCCCTCTCCTAGCCATGGTCGTGC
AGCCCCCCAACTTCTCGTGGGTGCTCCCCGGCCGGCTGGCGGGGCTGGCGCTGCCCCGGC
TCCCCGCGCACTACCAGTTCCTGCTGGACCAGGGTGTACGGCACTTGGTGTCACTGACGG
AACGCGGGCCTCCGCACCACGACAGCTGCCCCGGCCTCACCCTGCACCGACTGCGCATTC
CAGACTTCTGCCCGCCAGGCCCAGAGCAGATTGACCGCTTCGTGCAGATCGTGGACGAGG
CCAATGCCCGGGGAGAGGCGGTGGGAGTGCACTGTGCCCTGGGCTTTGGCCGCACTGGCA
CCATGCTGGCCTGTTACCTGGTCAAGGAGCGGCGCCTGGCTGCAGGAGACGCCATCGCTG
AGATCCGGCGCCTCCGACCCGGCTCCATCGAGACCTACGAGCAGGAGAAGGCAGTCTTCC
AGTTCTACCAGCGAACTAAATAAGGGACCTCAGCTCCATTCTGCGGGGCCCCCATGGCCC
TGACCTGTGCGTTAGATGGGGCCAGAGACATTCACGTGGACTAAAAGTGCTAATCCCTCC
AGTGTCCAGCTGGGTCAAGAGACTAAAGTTGTTCTTCCTTCCCGGCAGGCAGGTCCTGGT
AGGAGGGATGGCTGGAGCTGCATGGATGTTGGGGATTCCTCTGCTGCTGCCTTGAATAAA
TAAAGAACCAGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTGGTAGGCGGAGAGTTACCAAGCCCACGGACCGGAAGGGGGGGAGGGCGGAGCGGGG
CCGGCCGGCCTCGCCCCCTATGATCAGCTGTCTTGTGCCCTCTCCTAGCCATGGTCGTGC
AGCCCCCCAACTTCTCGTGGGTGCTCCCCGGCCGGCTGGCGGGGCTGGCGCTGCCCCGGC
TCCCCGCGCACTACCAGTTCCTGCTGGACCAGGGTGTACGGCACTTGGTGTCACTGACGG
AACGCGGGCCTCCGCACCACGACAGCTGCCCCGGCCTCACCCTGCACCGACTGCGCATTC
CAGACTTCTGCCCGCCAGGCCCAGAGCAGATTGACCGCTTCGTGCAGATCGTGGACGAGG
CCAATGCCCGGGGAGAGGCGGTGGGAGTGCACTGTGCCCTGGGCTTTGGCCGCACTGGCA
CCATGCTGGCCTGTTACCTGGTCAAGGAGCGGCGCCTGGCTGCAGGAGACGCCATCGCTG
AGATCCGGCGCCTCCGACCCGGCTCCATCGAGACCTACGAGCAGGAGAAGGCAGTCTTCC
AGTTCTACCAGCGAACTAAATAAGGGACCTCAGCTCCATTCTGCGGGGCCCCCATGGCCC
TGACCTGTGCGTTAGATGGGGCCAGAGACATTCACGTGGACTAAAAGTGCTAATCCCTCC
AGTGTCCAGCTGGGTCAAGAGACTAAAGTTGTTCTTCCTTCCCGGCAGGCAGGTCCTGGT
AGGAGGGATGGCTGGAGCTGCATGGATGTTGGGGATTCCTCTGCTGCTGCCTTGAATAAA
TAAAGAACCAGC

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q6NT99_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6NT99_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               535-652, - strand, RNAz p=0.642092

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               535-652, - strand, RNAz p=0.642092

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               376-792, gnl|bosTau2|chr3 (5667898-5667486)
               

               
               376-792, gnl|Hg17|chr1 (156565014-156565406)
               

               
               376-792, gnl|Mm7|chr1 (172602001-172601625)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               376-792, gnl|bosTau2|chr3 (5667898-5667486)
               

               
               376-792, gnl|Hg17|chr1 (156565014-156565406)
               

               
               376-792, gnl|Mm7|chr1 (172602001-172601625)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               nep (0.551775)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.551775)
               

               
               mcp (0.170648)
               

               
               nco (0.161734)
               

               
               cov (0.132153)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	376-792, gnl\|bosTau2\|chr3 (5667898-5667486)
	376-792, gnl\|Hg17\|chr1 (156565014-156565406)
	376-792, gnl\|Mm7\|chr1 (172602001-172601625)

	nep (0.551775)
	mcp (0.170648)
	nco (0.161734)
	cov (0.132153)
	med (0.116252)
	nbm (0.0993246)