Non-Coding RNA Search

Ss1.1-rnep18c_n8.5

Sequence:


               
               GGGGGATGAGTTTTTCTATTGTCCCCGAGACAGGTAATTTTGGGGAGGGAGAGAAGAGCT
ACTATTATAGCACACAGTACACCCCAGTCTCCCCGTCCATTTCCCAATCCTTAGATTCTG
GTTTCAAACTCCCTCGCTTTGCTCTTCAGTTGCAGGTCCCGATCTTTGGGTACTCCGGGA
GCTGCTCTCCAGCCTCTGCTTCTGAACCTATGGATTCTCCATCTAGCGTTTCTTCCTATT
CTTCCTATTCTCTTTCTTCCTCTTTTTCCACCTCCCCAGTGAACAGTGACTTTGGCTTCC
CCTCCGATAGTGAGGGGGAGGACAAGTGGGCCCATGGCCCCAGGCCAGACACTGTTGAGT
CGAGGGGAGGTTCTCGGCCCAGTCCGGGTCCTATCCGCTGCAGGCAACGACCCAAGGTTT
CCAGTAACCAACATACAGCATCTCACTTGGAACAGCGGGGCTTGGCTTCTTCTATGGCAG
GATCTGGGGTCAAAAGATCGAGAGATGGTGAAGTGGAGCCAAGTCTAAATATCCACGGTT
GTACCACCGAAGGAGATCTGCTCTTTGCTCAGAAGTGTAAAGAGCTCCAAGGATTCATTC
GACCTCTGACAGACCTACTGAATGGGTTGAAGATGGGTCGATTTGAAAGAGGATTGAGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGATGAGTTTTTCTATTGTCCCCGAGACAGGTAATTTTGGGGAGGGAGAGAAGAGCT
ACTATTATAGCACACAGTACACCCCAGTCTCCCCGTCCATTTCCCAATCCTTAGATTCTG
GTTTCAAACTCCCTCGCTTTGCTCTTCAGTTGCAGGTCCCGATCTTTGGGTACTCCGGGA
GCTGCTCTCCAGCCTCTGCTTCTGAACCTATGGATTCTCCATCTAGCGTTTCTTCCTATT
CTTCCTATTCTCTTTCTTCCTCTTTTTCCACCTCCCCAGTGAACAGTGACTTTGGCTTCC
CCTCCGATAGTGAGGGGGAGGACAAGTGGGCCCATGGCCCCAGGCCAGACACTGTTGAGT
CGAGGGGAGGTTCTCGGCCCAGTCCGGGTCCTATCCGCTGCAGGCAACGACCCAAGGTTT
CCAGTAACCAACATACAGCATCTCACTTGGAACAGCGGGGCTTGGCTTCTTCTATGGCAG
GATCTGGGGTCAAAAGATCGAGAGATGGTGAAGTGGAGCCAAGTCTAAATATCCACGGTT
GTACCACCGAAGGAGATCTGCTCTTTGCTCAGAAGTGTAAAGAGCTCCAAGGATTCATTC
GACCTCTGACAGACCTACTGAATGGGTTGAAGATGGGTCGATTTGAAAGAGGATTGAGCA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N795_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N795_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               116-390, - strand, RNAz p=0.927136

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               116-390, - strand, RNAz p=0.927136

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-580, gnl|bosTau2|chr3 (17175896-17175320)
               

               
               5-580, gnl|Hg17|chr1 (147068549-147069120)
               

               
               5-580, gnl|Mm7|chr3 (95755693-95755127)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-580, gnl|bosTau2|chr3 (17175896-17175320)
               

               
               5-580, gnl|Hg17|chr1 (147068549-147069120)
               

               
               5-580, gnl|Mm7|chr3 (95755693-95755127)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               nep (0.183925)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               jej (0.0989218)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               ste (0.135208)
               

               
               nmm (0.132802)
               

               
               jej (0.0989218)

	5-580, gnl\|bosTau2\|chr3 (17175896-17175320)
	5-580, gnl\|Hg17\|chr1 (147068549-147069120)
	5-580, gnl\|Mm7\|chr3 (95755693-95755127)