Ss1.1-rnep19c_k11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAAGGTGAGCCAGGCCGCCCCGGGAGCCCCGGCCTGCCCGGCATGCCCGGCCGCAGCGTC AGCATCGGCTACCTGCTGGTGAAGCACAGCCAGACGGACCAGGAGCCCATGTGCCCCGTG GGCATGAACAAGCTCTGGAGTGGATACAGCCTGCTGTACTTCGAGGGCCAAGAGAAGGCC CACAACCAGGACCTGGGGCTGGCGGGCTCCTGCCTGGCACGGTTCAGCACCATGCCCTTC CTGTACTGTAACCCCGGCGACATCTGCCACTACGCCAGCCGCAATGACAAGTCCTACTGG CTCTCCACCACCGCCCCGCTGCCCATGATGCCCGTGGCCGAGGAGGAGATCAGGCCCTAC ATCAGCCGCTGCTCCGTGTGCGAGGCCCCGGCCGTGGCCATTGCCGTCCACAGTCAAGAC GTGTCCATCCCCCACTGCCCGGCTGGGTGGCGGAGTCTGTGGATCGGATATTCCTTCCTC ATGCACACGGCCGCGGGCGACGAAGGTGGCGGCCAGTCGCTGGTGTCGCCGGGCAGCTGC CTGGAGGACTTCCGCGCCACGCCGTTCATCGAGTGCAACGGGGCGCGGGGCACCTGCCAC TACTACGCCAACAAGTACAGCTTCTGGCTGACCACCATCCCCGAGCAGAGCTTCCAGAGC TCGCCCTCGGCCGACACGCTCAAGGCCGGCCTCATCCGCACGCACATCAGCCGCTGCCAG GTGTGCATGAAGAACCTGTGACCCGCCCGGGCCGGGGCCGCCCCGCCGGACCCGCCTCTG CAGGCGGCGTGCAGCCGGAGGGCCACTTTGGTGCTTGTTCTTACCTTATTACCTCAGTGC CCGCCCAAAGTTGACGTCATTTTTTTTCTTTAAAAAACACCAAAAAAATAAAGTTCCCAA AGGAATTCAGCACCAGCACTGGGACCGCACAGCCCTCGCCGTCCCCAGGTCTCCGACCCC CCAGAACGGACAGCTAGTGACCCTCCCCTCGGGCCGACTAGGCTCTCCCGCACTCAGCGT AGCTCCCTTCTTACTGCACACCTTCAGCCGCCGCTGATAACCCACTTACTCAACTCACTT AATGGAGTGGTATAGACAGATGAAGCCGTGCAGCCCGAGGGCCCCTGAACCCTCCCACTG TTCCCGCCCGAGGGTCCCCGGGGTGGGGCCCCGCCCTGCTCTCCAAGCCACCACGGTGCC AGCACTGTCTTCTCCCAACACCGGTGACAGGAGGGACCCTCGTTCCCTCAGGAAGGCCGA CTGTGCCTTCTCTTTTAAAAGCCTCTGGTGTTTGCCGCCAGCTCGTGTGCTTTCCTCCAG CCACCGGGCTGGGCAAAGACCTTCTTTCTCCGCCTGCTGTCAGCCAAGCATCGTGTCGGC AGAGCTTGGGGGGACGGGGCGGGGGATGTGTTCTCCCCCCGCCCAGGCTGTCTGCACTCG GCCCCCGGTTCTCCGTGGCGAATTGTACTATGACCACTCCAGCCTCTGTAGCGACCCCGG AAAATAAAAGTTGGTCTTGAACCTTTTTATAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAAGGTGAGCCAGGCCGCCCCGGGAGCCCCGGCCTGCCCGGCATGCCCGGCCGCAGCGTC AGCATCGGCTACCTGCTGGTGAAGCACAGCCAGACGGACCAGGAGCCCATGTGCCCCGTG GGCATGAACAAGCTCTGGAGTGGATACAGCCTGCTGTACTTCGAGGGCCAAGAGAAGGCC CACAACCAGGACCTGGGGCTGGCGGGCTCCTGCCTGGCACGGTTCAGCACCATGCCCTTC CTGTACTGTAACCCCGGCGACATCTGCCACTACGCCAGCCGCAATGACAAGTCCTACTGG CTCTCCACCACCGCCCCGCTGCCCATGATGCCCGTGGCCGAGGAGGAGATCAGGCCCTAC ATCAGCCGCTGCTCCGTGTGCGAGGCCCCGGCCGTGGCCATTGCCGTCCACAGTCAAGAC GTGTCCATCCCCCACTGCCCGGCTGGGTGGCGGAGTCTGTGGATCGGATATTCCTTCCTC ATGCACACGGCCGCGGGCGACGAAGGTGGCGGCCAGTCGCTGGTGTCGCCGGGCAGCTGC CTGGAGGACTTCCGCGCCACGCCGTTCATCGAGTGCAACGGGGCGCGGGGCACCTGCCAC TACTACGCCAACAAGTACAGCTTCTGGCTGACCACCATCCCCGAGCAGAGCTTCCAGAGC TCGCCCTCGGCCGACACGCTCAAGGCCGGCCTCATCCGCACGCACATCAGCCGCTGCCAG GTGTGCATGAAGAACCTGTGACCCGCCCGGGCCGGGGCCGCCCCGCCGGACCCGCCTCTG CAGGCGGCGTGCAGCCGGAGGGCCACTTTGGTGCTTGTTCTTACCTTATTACCTCAGTGC CCGCCCAAAGTTGACGTCATTTTTTTTCTTTAAAAAACACCAAAAAAATAAAGTTCCCAA AGGAATTCAGCACCAGCACTGGGACCGCACAGCCCTCGCCGTCCCCAGGTCTCCGACCCC CCAGAACGGACAGCTAGTGACCCTCCCCTCGGGCCGACTAGGCTCTCCCGCACTCAGCGT AGCTCCCTTCTTACTGCACACCTTCAGCCGCCGCTGATAACCCACTTACTCAACTCACTT AATGGAGTGGTATAGACAGATGAAGCCGTGCAGCCCGAGGGCCCCTGAACCCTCCCACTG TTCCCGCCCGAGGGTCCCCGGGGTGGGGCCCCGCCCTGCTCTCCAAGCCACCACGGTGCC AGCACTGTCTTCTCCCAACACCGGTGACAGGAGGGACCCTCGTTCCCTCAGGAAGGCCGA CTGTGCCTTCTCTTTTAAAAGCCTCTGGTGTTTGCCGCCAGCTCGTGTGCTTTCCTCCAG CCACCGGGCTGGGCAAAGACCTTCTTTCTCCGCCTGCTGTCAGCCAAGCATCGTGTCGGC AGAGCTTGGGGGGACGGGGCGGGGGATGTGTTCTCCCCCCGCCCAGGCTGTCTGCACTCG GCCCCCGGTTCTCCGTGGCGAATTGTACTATGACCACTCCAGCCTCTGTAGCGACCCCGG AAAATAAAAGTTGGTCTTGAACCTTTTTATAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 80-197, - strand, RNAz p=0.902437 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 80-197, - strand, RNAz p=0.902437 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 3-197, gnl|bosTau2|chr12 (46231922-46231728) | |
| 3-197, gnl|Hg17|chr13 (109956761-109956955) | |
| 3-197, gnl|Mm7|chr8 (11412940-11413134) | |
| 201-371, gnl|bosTau2|chr12 (46540425-46540601) | |
| 201-371, gnl|canFam2|chr22 (61472629-61472819) | |
| 201-371, gnl|danRer3|chr9 (10094844-10095028) | |
| 201-371, gnl|dasNov1|scaffold_61466 (3483-3300) | |
| 201-371, gnl|echTel1|scaffold_311745 (61049-61231) | |
| 201-371, gnl|fr1|chrUn (237533240-237533056) | |
| 201-371, gnl|galGal2|chr1 (131805445-131805649) | |
| 201-371, gnl|hg17|chr13 (109611533-109611738) | |
| 201-371, gnl|Hg17|chr13 (109611713-109611537) | |
| 201-371, gnl|loxAfr1|scaffold_23602 (10997-11187) | |
| 201-371, gnl|mm7|chr8 (11174230-11174435) | |
| 201-371, gnl|Mm7|chr8 (11174410-11174234) | |
| 201-371, gnl|monDom2|scaffold_11 (37116296-37116089) | |
| 201-371, gnl|oryCun1|scaffold_200292 (61378-61173) | |
| 201-371, gnl|panTro1|chr14 (93048519-93048724) | |
| 201-371, gnl|rheMac2|chr17 (90248504-90248709) | |
| 201-371, gnl|rn3|chr16 (83135332-83135127) | |
| 201-371, gnl|tetNig1|chr2 (9490055-9489865) | |
| 201-371, gnl|xenTro1|scaffold_77 (229641-229438) | |
| 483-949, gnl|bosTau2|chr12 (46229451-46228969) | |
| 483-949, gnl|canFam2|chr22 (61772274-61772560) | |
| 483-949, gnl|danRer3|chr9 (8410084-8410346) | |
| 483-949, gnl|dasNov1|scaffold_3253 (32451-32160) | |
| 483-949, gnl|echTel1|scaffold_321849 (488-217) | |
| 483-949, gnl|fr1|chrUn (250114667-250114409) | |
| 483-949, gnl|galGal2|chr1 (132049012-132049305) | |
| 483-949, gnl|hg17|chr13 (109962280-109962546) | |
| 483-949, gnl|Hg17|chr13 (109962281-109962706) | |
| 483-949, gnl|loxAfr1|scaffold_991 (35766-35501) | |
| 483-949, gnl|mm7|chr8 (11416068-11416349) | |
| 483-949, gnl|Mm7|chr8 (11416069-11416631) | |
| 483-949, gnl|monDom2|scaffold_11 (36652227-36651930) | |
| 483-949, gnl|oryCun1|scaffold_127845 (11290-11561) | |
| 483-949, gnl|panTro1|chr14 (93403829-93404095) | |
| 483-949, gnl|rheMac2|chr17 (90587579-90587845) | |
| 483-949, gnl|rn3|chr16 (82886298-82886016) | |
| 483-949, gnl|tetNig1|chr2 (9431297-9431039) | |
| 483-949, gnl|xenTro1|scaffold_77 (22241-21970) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-197, gnl|bosTau2|chr12 (46231922-46231728) | |
| 3-197, gnl|Hg17|chr13 (109956761-109956955) | |
| 3-197, gnl|Mm7|chr8 (11412940-11413134) | |
| 201-371, gnl|bosTau2|chr12 (46540425-46540601) | |
| 201-371, gnl|canFam2|chr22 (61472629-61472819) | |
| 201-371, gnl|danRer3|chr9 (10094844-10095028) | |
| 201-371, gnl|dasNov1|scaffold_61466 (3483-3300) | |
| 201-371, gnl|echTel1|scaffold_311745 (61049-61231) | |
| 201-371, gnl|fr1|chrUn (237533240-237533056) | |
| 201-371, gnl|galGal2|chr1 (131805445-131805649) | |
| 201-371, gnl|hg17|chr13 (109611533-109611738) | |
| 201-371, gnl|Hg17|chr13 (109611713-109611537) | |
| 201-371, gnl|loxAfr1|scaffold_23602 (10997-11187) | |
| 201-371, gnl|mm7|chr8 (11174230-11174435) | |
| 201-371, gnl|Mm7|chr8 (11174410-11174234) | |
| 201-371, gnl|monDom2|scaffold_11 (37116296-37116089) | |
| 201-371, gnl|oryCun1|scaffold_200292 (61378-61173) | |
| 201-371, gnl|panTro1|chr14 (93048519-93048724) | |
| 201-371, gnl|rheMac2|chr17 (90248504-90248709) | |
| 201-371, gnl|rn3|chr16 (83135332-83135127) | |
| 201-371, gnl|tetNig1|chr2 (9490055-9489865) | |
| 201-371, gnl|xenTro1|scaffold_77 (229641-229438) | |
| 483-949, gnl|bosTau2|chr12 (46229451-46228969) | |
| 483-949, gnl|canFam2|chr22 (61772274-61772560) | |
| 483-949, gnl|danRer3|chr9 (8410084-8410346) | |
| 483-949, gnl|dasNov1|scaffold_3253 (32451-32160) | |
| 483-949, gnl|echTel1|scaffold_321849 (488-217) | |
| 483-949, gnl|fr1|chrUn (250114667-250114409) | |
| 483-949, gnl|galGal2|chr1 (132049012-132049305) | |
| 483-949, gnl|hg17|chr13 (109962280-109962546) | |
| 483-949, gnl|Hg17|chr13 (109962281-109962706) | |
| 483-949, gnl|loxAfr1|scaffold_991 (35766-35501) | |
| 483-949, gnl|mm7|chr8 (11416068-11416349) | |
| 483-949, gnl|Mm7|chr8 (11416069-11416631) | |
| 483-949, gnl|monDom2|scaffold_11 (36652227-36651930) | |
| 483-949, gnl|oryCun1|scaffold_127845 (11290-11561) | |
| 483-949, gnl|panTro1|chr14 (93403829-93404095) | |
| 483-949, gnl|rheMac2|chr17 (90587579-90587845) | |
| 483-949, gnl|rn3|chr16 (82886298-82886016) | |
| 483-949, gnl|tetNig1|chr2 (9431297-9431039) | |
| 483-949, gnl|xenTro1|scaffold_77 (22241-21970) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| ese (1.26502) | |
| nep (0.919625) | |
| eru (0.840336) | |
| amn (0.835422) | |
| nje (0.8296) | |
| jca (0.683761) | |
| nlu (0.575043) | |
| pla (0.534688) | |
| mcp (0.511945) | |
| nco (0.485201) | |
| ece (0.45861) | |
| cov (0.396458) | |
| elu (0.385356) | |
| ebs (0.354904) | |
| med (0.348756) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| jej (0.197844) | |
| eje (0.197668) | |
| fty (0.17584) | |
| eye (0.170503) | |
| csp (0.161186) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ese (1.26502) | |
| nep (0.919625) | |
| eru (0.840336) | |
| amn (0.835422) | |
| nje (0.8296) | |
| jca (0.683761) | |
| nlu (0.575043) | |
| pla (0.534688) | |
| mcp (0.511945) | |
| nco (0.485201) | |
| ece (0.45861) | |
| cov (0.396458) | |
| elu (0.385356) | |
| ebs (0.354904) | |
| med (0.348756) | |
| fce (0.271592) | |
| nmm (0.265604) | |
| jej (0.197844) | |
| eje (0.197668) | |
| fty (0.17584) | |
| eye (0.170503) | |
| csp (0.161186) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| ute (0.132784) | |
| eep (0.122564) | |
| cly (0.120642) | |
| clu (0.119646) |