Ss1.1-rnep19c_k15.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGCTGCACTCTAGGGCCAAGCGCGGCAGTCCGGACACCATGTCTGTGCGTTTTTCTCCT GCATCCAGACGCCTCGGTTCTTGCGGGGGAGCAGGCTCTGGGCGGCTCTCCAGTGGGGGA GCGGGCTTTGGCGTTGGCAGCGCATGCGGTGTGCCAGGCTTTGGAAGCAGTTTCTCGTGC GCCTTTGGGGGCAGCTCATCGGCTGGAGGCTATGGCGCGGGGCTGGGCGGAGGAAGTGCT TCCTGTGCTGCCTTCACCGGGAATGAACACGGCCTCCTTTCCGGCAACGAGAAGGTGACC ATGCAGAACCTCAATGACCGCCTGGCCTCCTACCTGGACAACGTGCGCGCCCTGGAGGAG GCCAACGCCGACCTGGAGCAGAAGATCAAGGGCTGGTATGAGAAATTTGGACCCGGTTCT TGCCGCGGTCTTGATCACGACTACAGTAGATACTTCCCGATAATTGACGACCTTAGGAAC CAGATAATTTCTGCAACAGCAAGTAATGCCAGCATTGTCCTGCAGAATGATAATGCAAGA CTCACAGCTGATGACTTCAGACTAAAGTTTGAAAACGAACAGGCCCTCCACCAGGGCGTG GACGCGGACATCAGCGGTCTGCGCCGGGTGCTGGACGAGCTGACCCTGTGCAGGACCGAC TTAGAGATTCAGCTGGAGACCCTGAGCGAGGAGCTGGCTTACCTCAAGAAGAATCACGAG GAGGAAATGAAGGCGCTGCAGTGCGCAGCAGGAGGCAACGTGAACGTGGAGATGAACGCG GCGCCCGGTGTGGACCTCACGGTTCTGCTGAACAACATGCGGGCGGAGTACGAAGCCCTG GCCGAGCAGAACCGCAGGGATGCGGAAGCCTGGTTCAATGAAAAGAGCGCTTCGCTGCAG CAGCAGATTTCTGACGATGCTGGCGCCACCACTTCAGCTCGAAATGAACTGACTGAGATG AAACGGACTCTTCAAACTCTGGAGATTGAATTTCAGTCCCTTTTAGCGATGAAACACTCC CTGGAGTGCTCCTTGAGCGAGACGGAGGGCAACTACTGTGCGCAGCTGGCCCAGATCCAG GCTCAGATCGGGGCCCTGGAGGAGCAGCTGCACCAGGTCAGGACTGAGACCGAGGGCCAG AAACTGGAGTACGAGCAGCTCCTGGACATCAAGGTCCACCTGGAAAAAGAAATTGAGACC TACTGCCTCCTGATAGATGGAGAGGATGGCTCTTGCGTTAAATCAAAAGGCTACGGAGGA CCAGGAAATCAGATAAAAGATTCCTCCAAAACCATCATGGTTAAAACAATTGTTGAAGAA ATAGATCCTCGTGGCAAAGCTCTCGCATCTAGAGTCCACGCTATGGAAGAGAAGTCCACC AAAGCCAGCACCATGAAGAGCGAACCACGGGTGCCTTCCTGAGCCCCAAAAGGATGAAAA TATCAAATCAAAGCTAGCTTCCTAAATAAGGCCCTCCTGTCTTTCCGCTTTTCTTACAAT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGCTGCACTCTAGGGCCAAGCGCGGCAGTCCGGACACCATGTCTGTGCGTTTTTCTCCT GCATCCAGACGCCTCGGTTCTTGCGGGGGAGCAGGCTCTGGGCGGCTCTCCAGTGGGGGA GCGGGCTTTGGCGTTGGCAGCGCATGCGGTGTGCCAGGCTTTGGAAGCAGTTTCTCGTGC GCCTTTGGGGGCAGCTCATCGGCTGGAGGCTATGGCGCGGGGCTGGGCGGAGGAAGTGCT TCCTGTGCTGCCTTCACCGGGAATGAACACGGCCTCCTTTCCGGCAACGAGAAGGTGACC ATGCAGAACCTCAATGACCGCCTGGCCTCCTACCTGGACAACGTGCGCGCCCTGGAGGAG GCCAACGCCGACCTGGAGCAGAAGATCAAGGGCTGGTATGAGAAATTTGGACCCGGTTCT TGCCGCGGTCTTGATCACGACTACAGTAGATACTTCCCGATAATTGACGACCTTAGGAAC CAGATAATTTCTGCAACAGCAAGTAATGCCAGCATTGTCCTGCAGAATGATAATGCAAGA CTCACAGCTGATGACTTCAGACTAAAGTTTGAAAACGAACAGGCCCTCCACCAGGGCGTG GACGCGGACATCAGCGGTCTGCGCCGGGTGCTGGACGAGCTGACCCTGTGCAGGACCGAC TTAGAGATTCAGCTGGAGACCCTGAGCGAGGAGCTGGCTTACCTCAAGAAGAATCACGAG GAGGAAATGAAGGCGCTGCAGTGCGCAGCAGGAGGCAACGTGAACGTGGAGATGAACGCG GCGCCCGGTGTGGACCTCACGGTTCTGCTGAACAACATGCGGGCGGAGTACGAAGCCCTG GCCGAGCAGAACCGCAGGGATGCGGAAGCCTGGTTCAATGAAAAGAGCGCTTCGCTGCAG CAGCAGATTTCTGACGATGCTGGCGCCACCACTTCAGCTCGAAATGAACTGACTGAGATG AAACGGACTCTTCAAACTCTGGAGATTGAATTTCAGTCCCTTTTAGCGATGAAACACTCC CTGGAGTGCTCCTTGAGCGAGACGGAGGGCAACTACTGTGCGCAGCTGGCCCAGATCCAG GCTCAGATCGGGGCCCTGGAGGAGCAGCTGCACCAGGTCAGGACTGAGACCGAGGGCCAG AAACTGGAGTACGAGCAGCTCCTGGACATCAAGGTCCACCTGGAAAAAGAAATTGAGACC TACTGCCTCCTGATAGATGGAGAGGATGGCTCTTGCGTTAAATCAAAAGGCTACGGAGGA CCAGGAAATCAGATAAAAGATTCCTCCAAAACCATCATGGTTAAAACAATTGTTGAAGAA ATAGATCCTCGTGGCAAAGCTCTCGCATCTAGAGTCCACGCTATGGAAGAGAAGTCCACC AAAGCCAGCACCATGAAGAGCGAACCACGGGTGCCTTCCTGAGCCCCAAAAGGATGAAAA TATCAAATCAAAGCTAGCTTCCTAAATAAGGCCCTCCTGTCTTTCCGCTTTTCTTACAAT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 398-487, + strand, RNAz p=0.939789 | |
| 761-1229, - strand, RNAz p=0.992459 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 398-487, + strand, RNAz p=0.939789 | |
| 761-1229, - strand, RNAz p=0.992459 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 3' of NM_181537, + |
| Aligned organism(s): 28 entry(ies) | More info |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
| 1-487, gnl|bosTau2|chr19 (33898352-33898838) | |
| 1-487, gnl|Hg17|chr17 (36192312-36191824) | |
| 1-487, gnl|Mm7|chr11 (99460136-99459660) | |
| 722-885, gnl|bosTau2|chr19 (33900604-33900767) | |
| 722-885, gnl|Hg17|chr17 (36189641-36189478) | |
| 722-885, gnl|Mm7|chr11 (99458123-99457960) | |
| 1011-1229, gnl|bosTau2|chr19 (33902662-33902880) | |
| 1011-1229, gnl|canFam2|chr9 (25232600-25232369) | |
| 1011-1229, gnl|danRer3|chr11 (8086472-8086705) | |
| 1011-1229, gnl|dasNov1|scaffold_5382 (9004-8775) | |
| 1011-1229, gnl|echTel1|scaffold_312304 (46008-45777) | |
| 1011-1229, gnl|fr1|chrUn (298049435-298049209) | |
| 1011-1229, gnl|galGal2|chr27_random (555792-555553) | |
| 1011-1229, gnl|hg17|chr17 (36187286-36187517) | |
| 1011-1229, gnl|Hg17|chr17 (36187511-36187293) | |
| 1011-1229, gnl|loxAfr1|scaffold_3749 (83594-83363) | |
| 1011-1229, gnl|mm7|chr11 (99455783-99456014) | |
| 1011-1229, gnl|Mm7|chr11 (99456008-99455790) | |
| 1011-1229, gnl|monDom2|scaffold_18 (50209913-50210144) | |
| 1011-1229, gnl|oryCun1|scaffold_203191 (7201-6970) | |
| 1011-1229, gnl|panTro1|chr19 (39434498-39434729) | |
| 1011-1229, gnl|rheMac2|chr16 (50895252-50895483) | |
| 1011-1229, gnl|rn3|chr10 (88264021-88264252) | |
| 1011-1229, gnl|tetNig1|chr18 (940071-940291) | |
| 1011-1229, gnl|xenTro1|scaffold_574 (222162-221931) | |
| 1278-1500, gnl|bosTau2|chr19 (33903662-33903892) | |
| 1278-1500, gnl|Hg17|chr17 (36186918-36186678) | |
| 1278-1500, gnl|Mm7|chr11 (99454914-99454692) |
| Aligned organism(s): 28 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-487, gnl|bosTau2|chr19 (33898352-33898838) | |
| 1-487, gnl|Hg17|chr17 (36192312-36191824) | |
| 1-487, gnl|Mm7|chr11 (99460136-99459660) | |
| 722-885, gnl|bosTau2|chr19 (33900604-33900767) | |
| 722-885, gnl|Hg17|chr17 (36189641-36189478) | |
| 722-885, gnl|Mm7|chr11 (99458123-99457960) | |
| 1011-1229, gnl|bosTau2|chr19 (33902662-33902880) | |
| 1011-1229, gnl|canFam2|chr9 (25232600-25232369) | |
| 1011-1229, gnl|danRer3|chr11 (8086472-8086705) | |
| 1011-1229, gnl|dasNov1|scaffold_5382 (9004-8775) | |
| 1011-1229, gnl|echTel1|scaffold_312304 (46008-45777) | |
| 1011-1229, gnl|fr1|chrUn (298049435-298049209) | |
| 1011-1229, gnl|galGal2|chr27_random (555792-555553) | |
| 1011-1229, gnl|hg17|chr17 (36187286-36187517) | |
| 1011-1229, gnl|Hg17|chr17 (36187511-36187293) | |
| 1011-1229, gnl|loxAfr1|scaffold_3749 (83594-83363) | |
| 1011-1229, gnl|mm7|chr11 (99455783-99456014) | |
| 1011-1229, gnl|Mm7|chr11 (99456008-99455790) | |
| 1011-1229, gnl|monDom2|scaffold_18 (50209913-50210144) | |
| 1011-1229, gnl|oryCun1|scaffold_203191 (7201-6970) | |
| 1011-1229, gnl|panTro1|chr19 (39434498-39434729) | |
| 1011-1229, gnl|rheMac2|chr16 (50895252-50895483) | |
| 1011-1229, gnl|rn3|chr10 (88264021-88264252) | |
| 1011-1229, gnl|tetNig1|chr18 (940071-940291) | |
| 1011-1229, gnl|xenTro1|scaffold_574 (222162-221931) | |
| 1278-1500, gnl|bosTau2|chr19 (33903662-33903892) | |
| 1278-1500, gnl|Hg17|chr17 (36186918-36186678) | |
| 1278-1500, gnl|Mm7|chr11 (99454914-99454692) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (2.75887) | |
| ski (0.440205) |