Non-Coding RNA Search

Ss1.1-rnep19c_o15.5

Sequence:


               
               ACGGAGCCAGATGGCGTTTAATGATTGCTTTAGTTTGAACTATCCTGGCAATCCTCGGCC
AGGGGACTTGATTGAAGTGTTTCGTCCTGGCTACCAGCACTGGGCACTGTACTTGGGTGA
TGGGTATGTGATCAACATAGCACCTCTAGAGGATGGCATTTCCACATCATTTACAAGCGC
CAAGTCTATATTCAGCACAAAGGCCCTGGTGAAGATGCAGCTTTTGAAGGATGTAGTGGG
AAATGACACTTTCAGAATAAACAATAAGTACGATGACACATACGCCCCTCTCCCCGTGGA
AGAGGTCATGCAACGGTCAGAGTTTGTTATTGGACAGGAAGTGGAGTATGACATATTTGT
CAACAACTGTGAGCATTTTGTGACTTTGCTCCGCTATGGAGCAGGAATTTCAGAGCAGGC
CAACCGAGCAATCAGTACCATTGGGTTTGTGACAGCTGCTGCTGGTGCCTTCTCGTTCCT
GGGCTTGTTTCCAAAAAGACTAAGAGCAAAATACTATTAATTTACTGAAGAGATATTGGA
GCTGAAGGAATTTGTGAGGAGGGGAAAAAAAAAAAAAAAAACCCTGGGATGAATACTTAT
TTTCAATGCATCATTATTGTTCCAAATTCCACTGATGGATGGCAGGCTCTTTAATAAATT
GCTTACTGGTATTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGGAGCCAGATGGCGTTTAATGATTGCTTTAGTTTGAACTATCCTGGCAATCCTCGGCC
AGGGGACTTGATTGAAGTGTTTCGTCCTGGCTACCAGCACTGGGCACTGTACTTGGGTGA
TGGGTATGTGATCAACATAGCACCTCTAGAGGATGGCATTTCCACATCATTTACAAGCGC
CAAGTCTATATTCAGCACAAAGGCCCTGGTGAAGATGCAGCTTTTGAAGGATGTAGTGGG
AAATGACACTTTCAGAATAAACAATAAGTACGATGACACATACGCCCCTCTCCCCGTGGA
AGAGGTCATGCAACGGTCAGAGTTTGTTATTGGACAGGAAGTGGAGTATGACATATTTGT
CAACAACTGTGAGCATTTTGTGACTTTGCTCCGCTATGGAGCAGGAATTTCAGAGCAGGC
CAACCGAGCAATCAGTACCATTGGGTTTGTGACAGCTGCTGCTGGTGCCTTCTCGTTCCT
GGGCTTGTTTCCAAAAAGACTAAGAGCAAAATACTATTAATTTACTGAAGAGATATTGGA
GCTGAAGGAATTTGTGAGGAGGGGAAAAAAAAAAAAAAAAACCCTGGGATGAATACTTAT
TTTCAATGCATCATTATTGTTCCAAATTCCACTGATGGATGGCAGGCTCTTTAATAAATT
GCTTACTGGTATTAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               HRSL1_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               HRSL1_HUMAN

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               147-419, gnl|bosTau2|chr1 (46338037-46337765)
               

               
               147-419, gnl|Hg17|chr3 (194463458-194463727)
               

               
               147-419, gnl|Mm7|chr16 (28883477-28883746)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               147-419, gnl|bosTau2|chr1 (46338037-46337765)
               

               
               147-419, gnl|Hg17|chr3 (194463458-194463727)
               

               
               147-419, gnl|Mm7|chr16 (28883477-28883746)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               tes (0.415628)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               sme (0.305437)
               

               
               nep (0.183925)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)

Expressed library(ies): 7 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               hea (0.408998)
               

               
               che (0.408942)
               

               
               sme (0.305437)
               

               
               nep (0.183925)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)

	147-419, gnl\|bosTau2\|chr1 (46338037-46337765)
	147-419, gnl\|Hg17\|chr3 (194463458-194463727)
	147-419, gnl\|Mm7\|chr16 (28883477-28883746)

	tes (0.415628)
	hea (0.408998)
	che (0.408942)
	sme (0.305437)
	nep (0.183925)
	hlv (0.139256)
	ssp (0.13552)