Non-Coding RNA Search

Ss1.1-rnep23c_m24.5

Sequence:


               
               TATTTTAAAGTATCAGTACTATGAACATCATCACTTAAATTGCTACCTGATGAGTACTTA
TCTTGGGGTTTCTTCTTCATCTTATTTTTTTTTTTT------------------------
------------------------------------------------------------
------------------------------------ACCTATGCCTCTGCAGCAACCCTA
GGCACTACAGGTTGGATTCTTAACCCACTGCATCACAATGGGAACTCCAGGTTCTTCTAA
GTGGATCTGCCTTAAAGCTCTGGTATCTTGAAAACTGACTATAAATGTTATTCCGTGGCT
AAGGACCCTGTTTTTGCCTGTTTAAGGCACTTGCCCAGAATGTAGGCCTTCCTTCAGCCT
GTCCACTTTTGGAGAATTGCTTGGCCTCTTTAAGCCAAACATGAGGATAATTAGCCCAGG
GTTCAGATAAGCAGACCTAATAAAGCATCCCAAATAGGAGCCAGTTCTTCTTTCTTTCTC
TGCCTTTTTAATACCAGAAAGCCAAATTCTCAGGATTGAATCCTGCGTAAGAATGTTCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TATTTTAAAGTATCAGTACTATGAACATCATCACTTAAATTGCTACCTGATGAGTACTTA
TCTTGGGGTTTCTTCTTCATCTTATTTTTTTTTTTT------------------------
------------------------------------------------------------
------------------------------------ACCTATGCCTCTGCAGCAACCCTA
GGCACTACAGGTTGGATTCTTAACCCACTGCATCACAATGGGAACTCCAGGTTCTTCTAA
GTGGATCTGCCTTAAAGCTCTGGTATCTTGAAAACTGACTATAAATGTTATTCCGTGGCT
AAGGACCCTGTTTTTGCCTGTTTAAGGCACTTGCCCAGAATGTAGGCCTTCCTTCAGCCT
GTCCACTTTTGGAGAATTGCTTGGCCTCTTTAAGCCAAACATGAGGATAATTAGCCCAGG
GTTCAGATAAGCAGACCTAATAAAGCATCCCAAATAGGAGCCAGTTCTTCTTTCTTTCTC
TGCCTTTTTAATACCAGAAAGCCAAATTCTCAGGATTGAATCCTGCGTAAGAATGTTCTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               364-473, - strand, RNAz p=0.529648

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               364-473, - strand, RNAz p=0.529648

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               172-480, gnl|bosTau2|chr11 (16705818-16706137)
               

               
               172-480, gnl|Hg17|chr2 (39577567-39578195)
               

               
               172-480, gnl|Mm7|chr17 (79025146-79025467)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-480, gnl|bosTau2|chr11 (16705818-16706137)
               

               
               172-480, gnl|Hg17|chr2 (39577567-39578195)
               

               
               172-480, gnl|Mm7|chr17 (79025146-79025467)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               nbm (0.0993246)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               nbm (0.0993246)

	172-480, gnl\|bosTau2\|chr11 (16705818-16706137)
	172-480, gnl\|Hg17\|chr2 (39577567-39578195)
	172-480, gnl\|Mm7\|chr17 (79025146-79025467)