Non-Coding RNA Search

Ss1.1-rnep24c_f11.5

Sequence:


               
               CGTCAGGTCAGATCGGACCCTCCGGAGCTCCAGCAGAAAAGACCCCTCGTCTTCCTGGCA
GCCCCTGAGAAACAGAGAGGCCACCATGGCAAGACCCCTTCTTCCACCCCGGCTGATCCT
ACTGCTGTCCTTAGCCCTGGGTTCCGCTGCACAGGAAGGCCAGGGGGACAAGAGTGGGGA
GAAGATTATTGATGGAGTCCCATGTCCCGGAGGCTCCCGCCCTTGGCAGGTGGCTCTGCT
CAAGGGCAATCAGCTGCACTGTGGAGGTGTGCTGGTCAACCAGCAGTGGGTGCTCACCGC
CGCCCACTGCATGATGAATGATTACAACGTCCACCTGGGCAGTGACCGCCTGGATGACAG
GAAAGGCCAGAAGATCAGGGCCATGAGGTCATTCCGCCACCCTGGCTACTCCACACAGAC
CCATGTTAATGACCTCATGCTGGTGAAGCTCAGTCGCCCGGCCAGGCTATCAGCCAGTGT
GAAGAAAGTCAACCTGCCTTCCCGCTGTGAACCCCCTGGGACCACATGTACCGTTTCTGG
CTGGGGCACCACCACCAGCCCTGACGTGACCTTCCCAGCAGACCTCATGTGCACAGACGT
CAAGCTCATCTCCTCCCAGGACTGCAAGAAGGTTTACAAGGACCTTCTGGGAAGTTCCAT
GCTCTGTGCCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGTCAGGTCAGATCGGACCCTCCGGAGCTCCAGCAGAAAAGACCCCTCGTCTTCCTGGCA
GCCCCTGAGAAACAGAGAGGCCACCATGGCAAGACCCCTTCTTCCACCCCGGCTGATCCT
ACTGCTGTCCTTAGCCCTGGGTTCCGCTGCACAGGAAGGCCAGGGGGACAAGAGTGGGGA
GAAGATTATTGATGGAGTCCCATGTCCCGGAGGCTCCCGCCCTTGGCAGGTGGCTCTGCT
CAAGGGCAATCAGCTGCACTGTGGAGGTGTGCTGGTCAACCAGCAGTGGGTGCTCACCGC
CGCCCACTGCATGATGAATGATTACAACGTCCACCTGGGCAGTGACCGCCTGGATGACAG
GAAAGGCCAGAAGATCAGGGCCATGAGGTCATTCCGCCACCCTGGCTACTCCACACAGAC
CCATGTTAATGACCTCATGCTGGTGAAGCTCAGTCGCCCGGCCAGGCTATCAGCCAGTGT
GAAGAAAGTCAACCTGCCTTCCCGCTGTGAACCCCCTGGGACCACATGTACCGTTTCTGG
CTGGGGCACCACCACCAGCCCTGACGTGACCTTCCCAGCAGACCTCATGTGCACAGACGT
CAAGCTCATCTCCTCCCAGGACTGCAAGAAGGTTTACAAGGACCTTCTGGGAAGTTCCAT
GCTCTGTGCCGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               KLK7_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               KLK7_HUMAN

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               147-386, - strand, RNAz p=0.988651
               

               
               539-658, - strand, RNAz p=0.581872

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               147-386, - strand, RNAz p=0.988651
               

               
               539-658, - strand, RNAz p=0.581872

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               27-672, gnl|bosTau2|chr29 (3171384-3170753)
               


               
               307-584, gnl|bosTau2|chr18 (52200468-52200194)
               

               
               307-584, gnl|Hg17|chr19 (56175568-56175254)
               

               
               307-584, gnl|Mm7|chr7 (39988473-39988751)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-672, gnl|bosTau2|chr29 (3171384-3170753)
               


               
               307-584, gnl|bosTau2|chr18 (52200468-52200194)
               

               
               307-584, gnl|Hg17|chr19 (56175568-56175254)
               

               
               307-584, gnl|Mm7|chr7 (39988473-39988751)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               nep (0.183925)
               

               
               med (0.116252)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               med (0.116252)

	147-386, - strand, RNAz p=0.988651
	539-658, - strand, RNAz p=0.581872

	27-672, gnl\|bosTau2\|chr29 (3171384-3170753)

	307-584, gnl\|bosTau2\|chr18 (52200468-52200194)
	307-584, gnl\|Hg17\|chr19 (56175568-56175254)
	307-584, gnl\|Mm7\|chr7 (39988473-39988751)