Non-Coding RNA Search

Ss1.1-rnep25c_h21.5

Sequence:


               
               AAGCACATGACCCCAGCCCTGAGTGCCCACCCCTGACGGGGCAGCTCCCTGGGACCCAGA
GCGCCCGGCTGCTGTTTGCACCGCAAAGCTAGGCTTTGTCTACCTCGGCTCGCGTCCACG
TATACAGGAAGGAGAGGTGGGAGAGGCAGCGGGGAGGCTCGGCTTCCAGCGTCCCTGATT
TGTACATAGTTTTTTCACTTCCATGGGGAGTGTCAGCAGTTTGAAGGACTTGCAGCTGAA
GCACAGAAATGCAAGAAGCTGTTGTGTACAAAAGGCAAAAAAGTATTTGATACCCTTGTA
CATAAGAGTTTTTTCAGAGATGGCATATATATTATATATCTTTTACAGAGGCTATTTTAA
TCTTTAGTGCATGGTTAACAGAAAAAGTCGTACAGTTTTGACAATGTTATTTTTCATACC
AGGTTGCTGTTTAATTCTGGAAGGGGGGTGGTTCTGGTGCCTTACTGCGAGGATGGAGTT
CCTAGAGGCTACAAACCACACTTGTGGGCAGAGTTTTCGGTGGGTGAAAGAGAAGGGATG
TTTTTCTGCCGGAGACTTTGTTTGCTTTGGAAGGAACTTCATGTCCGGGTGGCTCGTGTG
TGGATGACCTTGTGGCGACCTTCCTATGGAGCCGAGGTGCGGATGTCGTGTTTCTTTGCC
GTGAAGGACTTCTCGTAGGTTTAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGCACATGACCCCAGCCCTGAGTGCCCACCCCTGACGGGGCAGCTCCCTGGGACCCAGA
GCGCCCGGCTGCTGTTTGCACCGCAAAGCTAGGCTTTGTCTACCTCGGCTCGCGTCCACG
TATACAGGAAGGAGAGGTGGGAGAGGCAGCGGGGAGGCTCGGCTTCCAGCGTCCCTGATT
TGTACATAGTTTTTTCACTTCCATGGGGAGTGTCAGCAGTTTGAAGGACTTGCAGCTGAA
GCACAGAAATGCAAGAAGCTGTTGTGTACAAAAGGCAAAAAAGTATTTGATACCCTTGTA
CATAAGAGTTTTTTCAGAGATGGCATATATATTATATATCTTTTACAGAGGCTATTTTAA
TCTTTAGTGCATGGTTAACAGAAAAAGTCGTACAGTTTTGACAATGTTATTTTTCATACC
AGGTTGCTGTTTAATTCTGGAAGGGGGGTGGTTCTGGTGCCTTACTGCGAGGATGGAGTT
CCTAGAGGCTACAAACCACACTTGTGGGCAGAGTTTTCGGTGGGTGAAAGAGAAGGGATG
TTTTTCTGCCGGAGACTTTGTTTGCTTTGGAAGGAACTTCATGTCCGGGTGGCTCGTGTG
TGGATGACCTTGTGGCGACCTTCCTATGGAGCCGAGGTGCGGATGTCGTGTTTCTTTGCC
GTGAAGGACTTCTCGTAGGTTTAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               80-194, + strand, RNAz p=0.559107

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-194, + strand, RNAz p=0.559107

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of AY730707, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of AY730707, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-523, gnl|bosTau2|chr22 (25889616-25890139)
               

               
               1-523, gnl|Hg17|chr3 (66513468-66512942)
               

               
               1-523, gnl|Mm7|chr6 (94693951-94693461)
               


               
               535-682, gnl|bosTau2|chr22 (25890179-25890328)
               

               
               535-682, gnl|Hg17|chr3 (66512889-66512735)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-523, gnl|bosTau2|chr22 (25889616-25890139)
               

               
               1-523, gnl|Hg17|chr3 (66513468-66512942)
               

               
               1-523, gnl|Mm7|chr6 (94693951-94693461)
               


               
               535-682, gnl|bosTau2|chr22 (25890179-25890328)
               

               
               535-682, gnl|Hg17|chr3 (66512889-66512735)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nep (0.183925)
               

               
               che (0.136314)
               

               
               cov (0.132153)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)
               

               
               che (0.136314)
               

               
               cov (0.132153)

	1-523, gnl\|bosTau2\|chr22 (25889616-25890139)
	1-523, gnl\|Hg17\|chr3 (66513468-66512942)
	1-523, gnl\|Mm7\|chr6 (94693951-94693461)

	535-682, gnl\|bosTau2\|chr22 (25890179-25890328)
	535-682, gnl\|Hg17\|chr3 (66512889-66512735)