Non-Coding RNA Search

Ss1.1-rnep25c_p15.5

Sequence:


               
               CTCAACCCAACCAAAACCCAACTCGCGACACCATGGCCTGCTGTGTTTCCCAGTGCTGCA
GGGTCCCCACCGGCCCCGCCACCACCATCTGCTCCTCTGACAAATTCTGCCGGTGTGGAG
TCTGCCTGCCCAGCACCTGCCCCCATGAGGTCAGCCTCCTCCAGCCCATCTGCTGTGACA
ACTGCCCCCTACCCTGCTGTGAGCCTGACACCTACGTGCCAACTTGCTGGCTGCTCAACT
CTTCCTACCCCACCCCCGGGCTGAGTGGAATCGACCTGACGACCATCGTTCAGCCTGGCT
GTGAAAGTCGCTGTGAGCCCCGCTGTTAAGTAGCCACGGCTTTGCACGGTCCTGTGATGA
GCTGCTCAACGTCTTACGCCTCATCCGGGCTTCCACCCTCACTACTACTGACGTCCGTCT
AAACCAATCGCATCTGCCAGGGCGGTGTTTTCGTGCATGTGCCCGACTTCTTAATCCTTC
CTTCTCTCGAGGAGAGTTGGAGACCTTCTTTCTGTCTTTTAGGGTATTTCATTGCTCTTT
GAGAAAGAATCTTTTTGACTCTTCCTTAATAAACGTCATTCTGGCTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAACCCAACCAAAACCCAACTCGCGACACCATGGCCTGCTGTGTTTCCCAGTGCTGCA
GGGTCCCCACCGGCCCCGCCACCACCATCTGCTCCTCTGACAAATTCTGCCGGTGTGGAG
TCTGCCTGCCCAGCACCTGCCCCCATGAGGTCAGCCTCCTCCAGCCCATCTGCTGTGACA
ACTGCCCCCTACCCTGCTGTGAGCCTGACACCTACGTGCCAACTTGCTGGCTGCTCAACT
CTTCCTACCCCACCCCCGGGCTGAGTGGAATCGACCTGACGACCATCGTTCAGCCTGGCT
GTGAAAGTCGCTGTGAGCCCCGCTGTTAAGTAGCCACGGCTTTGCACGGTCCTGTGATGA
GCTGCTCAACGTCTTACGCCTCATCCGGGCTTCCACCCTCACTACTACTGACGTCCGTCT
AAACCAATCGCATCTGCCAGGGCGGTGTTTTCGTGCATGTGCCCGACTTCTTAATCCTTC
CTTCTCTCGAGGAGAGTTGGAGACCTTCTTTCTGTCTTTTAGGGTATTTCATTGCTCTTT
GAGAAAGAATCTTTTTGACTCTTCCTTAATAAACGTCATTCTGGCTTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1944401|dbj|BAA19685.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1944401|dbj|BAA19685.1|

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               2-582, gnl|bosTau2|chr19 (33671462-33672043)
               

               
               2-582, gnl|Hg17|chr17 (36418880-36418310)
               

               
               2-582, gnl|Mm7|chr11 (99675653-99675075)
               


               
               14-263, gnl|bosTau2|chr16 (20535900-20536152)
               

               
               14-263, gnl|Hg17|chr17_random (2560798-2561046)
               

               
               14-263, gnl|Mm7|chr11 (99665857-99665609)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-582, gnl|bosTau2|chr19 (33671462-33672043)
               

               
               2-582, gnl|Hg17|chr17 (36418880-36418310)
               

               
               2-582, gnl|Mm7|chr11 (99675653-99675075)
               


               
               14-263, gnl|bosTau2|chr16 (20535900-20536152)
               

               
               14-263, gnl|Hg17|chr17_random (2560798-2561046)
               

               
               14-263, gnl|Mm7|chr11 (99665857-99665609)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               ton (2.6325)
               

               
               nep (2.02317)
               

               
               ski (0.146735)
               

               
               csk (0.140746)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (2.6325)
               

               
               nep (2.02317)
               

               
               ski (0.146735)
               

               
               csk (0.140746)

	2-582, gnl\|bosTau2\|chr19 (33671462-33672043)
	2-582, gnl\|Hg17\|chr17 (36418880-36418310)
	2-582, gnl\|Mm7\|chr11 (99675653-99675075)

	14-263, gnl\|bosTau2\|chr16 (20535900-20536152)
	14-263, gnl\|Hg17\|chr17_random (2560798-2561046)
	14-263, gnl\|Mm7\|chr11 (99665857-99665609)