Non-Coding RNA Search

Ss1.1-rnep26c_g14.5

Sequence:


               
               ACTTGGTCAAGATCCGGCGGTGCGGGCCGGTAGCACAGTCGTAACGGCGGCTGCGGAAAG
TAGTGCTCTTGGTTTCTAGACCGCGTCAGTGCCTGAGCCGGGCTGCCACTCTTGCCTGTC
CCGTCCCTCATGGCGCTGCCCCGACGCCCGACGGTGTCTACTGATTTGGAGAATATTGAC
ATAGGACTTAATTCTAAACCTAAGAGTCATGTGACTATCAGGAGGGCAGTTTTAGAAGAA
ATTGGAAATCGAGTTACAACCAGAGCCACCCAGGTAGCTAAGAAAGCTCAGAACATCAAG
GTACTTGTCCCGCCCAGCAAAACAACAAATGCCAACAAGCCCTTGAAACCTACTGCTTCT
GTGAAACCAGTACAGATGGAAATGTTGGCTCCAAAGGGTCCTTCTCCCACACCTGAGGAC
ATGAAGGAGGAGAGCCTCTGCCAAGCTTTCTCTGATGCTTTGCTCTGCAAAATTGAGGAT
ATTGATAATGAAGATGGGGAAAACCCTCAGCTCTGCAGCGACTATGTTAAGGATATCTAC
CAGTACCTAAAGCAGCTTGAGGTTCTGCATCCCATCAATCCCCATTTCTTAGATGGAAGA
GATATAAATGGACGTATGCGTGCCATCCTGGTGGACTGGCTGGTGCAGGTCCACTCCAAG
TTTAGGCTGCTGCAGGAAACTCTGTACATGTGCGTGGCCATCATGGATCGATTTTTACAG
GTTCAGCCAGTCTCTCGTAAGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTGGTCAAGATCCGGCGGTGCGGGCCGGTAGCACAGTCGTAACGGCGGCTGCGGAAAG
TAGTGCTCTTGGTTTCTAGACCGCGTCAGTGCCTGAGCCGGGCTGCCACTCTTGCCTGTC
CCGTCCCTCATGGCGCTGCCCCGACGCCCGACGGTGTCTACTGATTTGGAGAATATTGAC
ATAGGACTTAATTCTAAACCTAAGAGTCATGTGACTATCAGGAGGGCAGTTTTAGAAGAA
ATTGGAAATCGAGTTACAACCAGAGCCACCCAGGTAGCTAAGAAAGCTCAGAACATCAAG
GTACTTGTCCCGCCCAGCAAAACAACAAATGCCAACAAGCCCTTGAAACCTACTGCTTCT
GTGAAACCAGTACAGATGGAAATGTTGGCTCCAAAGGGTCCTTCTCCCACACCTGAGGAC
ATGAAGGAGGAGAGCCTCTGCCAAGCTTTCTCTGATGCTTTGCTCTGCAAAATTGAGGAT
ATTGATAATGAAGATGGGGAAAACCCTCAGCTCTGCAGCGACTATGTTAAGGATATCTAC
CAGTACCTAAAGCAGCTTGAGGTTCTGCATCCCATCAATCCCCATTTCTTAGATGGAAGA
GATATAAATGGACGTATGCGTGCCATCCTGGTGGACTGGCTGGTGCAGGTCCACTCCAAG
TTTAGGCTGCTGCAGGAAACTCTGTACATGTGCGTGGCCATCATGGATCGATTTTTACAG
GTTCAGCCAGTCTCTCGTAAGAAG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|61554375|gb|AAX46547.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|61554375|gb|AAX46547.1|

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               153-282, gnl|bosTau2|chr10 (38276550-38276421)
               

               
               153-282, gnl|Hg17|chr15 (57186812-57186941)
               

               
               153-282, gnl|Mm7|chr9 (70451080-70450951)
               


               
               395-563, gnl|bosTau2|chr10 (38267484-38267310)
               

               
               395-563, gnl|Hg17|chr15 (57193933-57194107)
               

               
               395-563, gnl|Mm7|chr9 (70445224-70445050)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               153-282, gnl|bosTau2|chr10 (38276550-38276421)
               

               
               153-282, gnl|Hg17|chr15 (57186812-57186941)
               

               
               153-282, gnl|Mm7|chr9 (70451080-70450951)
               


               
               395-563, gnl|bosTau2|chr10 (38267484-38267310)
               

               
               395-563, gnl|Hg17|chr15 (57193933-57194107)
               

               
               395-563, gnl|Mm7|chr9 (70445224-70445050)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               nep (0.183925)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	153-282, gnl\|bosTau2\|chr10 (38276550-38276421)
	153-282, gnl\|Hg17\|chr15 (57186812-57186941)
	153-282, gnl\|Mm7\|chr9 (70451080-70450951)

	395-563, gnl\|bosTau2\|chr10 (38267484-38267310)
	395-563, gnl\|Hg17\|chr15 (57193933-57194107)
	395-563, gnl\|Mm7\|chr9 (70445224-70445050)