Ss1.1-rnep26c_m2.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTGAACCGCAGCCATGGAGCAGGCATCTCCAGACTCTGAACGGCTTTTGCAGCCTGCGAC CCTAGAGCCGCTGGGCCACCCTGACGCTGAGCTGGAGTCTGTGGTGGGTGAGGAAGCAGA GGGGGCCCGGGAAGACGGCTCCGGAGACGGCAAGATGACAGAAAATAATTTTTGGTTGAA GAAGATAGAAATTAGTGTTTCAGAAGCAGAAAAGCGAACTGGAAGAAATGCCATGAACAT GCAAGAAACATATACTGCTTACCTCATTGAAACAAGGTCAGTTGAACATATTGATGGTCA GAGTGTCCTAACAGACTCACTATGGAGGCGGTATAGTGAATTTGAGTTGTTGAGAAACTA CCTTTTAGTTTACTATCCACATATTGTCGTGCCACCTCTACCAGAAAAAAGGGCAGAATT TGTTTGGCATAAACTCTCTGCTGACAACATGGATCCAGATTTGGTGGAAAGACGACGAAT TGGTCTGGAAAACTTCCTCTTGAGAGTTGCTTCACATCCCATCCTTTGTAGAGACAGAAT CTTCTATTTGTTCTTAACACAGGAAGGTAACTGGAAAAGGGAATGGGGGACTTGAGGAAC AAGTCTGGGACTGTAAGGGTGGTTGGCCTGGTGCCACCATCAGGAGATGGAATAAAGTGT TAGAGTTAAGAAAGGGTATAGGTGAAAAAGATTTTTGAAAAACTCCTTATTGGACTGTAA TTTCCTCATTTGGGGTCAGTGCTCTGTCTCCTAATGGAGACGTGGCATAGATATCCCATG AATCTGCTTTGAGAAGCCCCTTTGATAATTAGTGCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTGAACCGCAGCCATGGAGCAGGCATCTCCAGACTCTGAACGGCTTTTGCAGCCTGCGAC CCTAGAGCCGCTGGGCCACCCTGACGCTGAGCTGGAGTCTGTGGTGGGTGAGGAAGCAGA GGGGGCCCGGGAAGACGGCTCCGGAGACGGCAAGATGACAGAAAATAATTTTTGGTTGAA GAAGATAGAAATTAGTGTTTCAGAAGCAGAAAAGCGAACTGGAAGAAATGCCATGAACAT GCAAGAAACATATACTGCTTACCTCATTGAAACAAGGTCAGTTGAACATATTGATGGTCA GAGTGTCCTAACAGACTCACTATGGAGGCGGTATAGTGAATTTGAGTTGTTGAGAAACTA CCTTTTAGTTTACTATCCACATATTGTCGTGCCACCTCTACCAGAAAAAAGGGCAGAATT TGTTTGGCATAAACTCTCTGCTGACAACATGGATCCAGATTTGGTGGAAAGACGACGAAT TGGTCTGGAAAACTTCCTCTTGAGAGTTGCTTCACATCCCATCCTTTGTAGAGACAGAAT CTTCTATTTGTTCTTAACACAGGAAGGTAACTGGAAAAGGGAATGGGGGACTTGAGGAAC AAGTCTGGGACTGTAAGGGTGGTTGGCCTGGTGCCACCATCAGGAGATGGAATAAAGTGT TAGAGTTAAGAAAGGGTATAGGTGAAAAAGATTTTTGAAAAACTCCTTATTGGACTGTAA TTTCCTCATTTGGGGTCAGTGCTCTGTCTCCTAATGGAGACGTGGCATAGATATCCCATG AATCTGCTTTGAGAAGCCCCTTTGATAATTAGTGCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 4-576, gnl|bosTau2|chr5 (27052807-27052242) | |
| 4-576, gnl|Mm7|chr17 (20425998-20425434) | |
| 153-303, gnl|bosTau2|chr1 (37471309-37471457) | |
| 153-303, gnl|Hg17|chr3 (126706280-126706132) | |
| 153-303, gnl|Mm7|chr16 (32938781-32938919) | |
| 412-563, gnl|bosTau2|chr1 (37477326-37477477) | |
| 412-563, gnl|canFam2|chr33 (31501856-31502044) | |
| 412-563, gnl|danRer3|chr5 (67572452-67572649) | |
| 412-563, gnl|dasNov1|scaffold_64076 (8179-8366) | |
| 412-563, gnl|echTel1|scaffold_199148 (3936-3741) | |
| 412-563, gnl|fr1|chrUn (310824314-310824527) | |
| 412-563, gnl|galGal2|chr7 (28799594-28799769) | |
| 412-563, gnl|hg17|chr3 (126699366-126699554) | |
| 412-563, gnl|Hg17|chr3 (126699518-126699367) | |
| 412-563, gnl|mm7|chr16 (32942695-32942507) | |
| 412-563, gnl|Mm7|chr16 (32942541-32942692) | |
| 412-563, gnl|monDom2|scaffold_24 (24559182-24559369) | |
| 412-563, gnl|panTro1|chr2 (128535767-128535955) | |
| 412-563, gnl|rheMac2|chr2 (45484988-45485176) | |
| 412-563, gnl|rn3|chr11 (69373189-69373377) | |
| 412-563, gnl|tetNig1|chrUn_random (48559047-48559310) | |
| 577-696, gnl|bosTau2|chr1 (37460321-37460440) | |
| 577-696, gnl|hg17|chr3 (126720988-126721853) | |
| 577-696, gnl|Hg17|chr3 (126721099-126720975) | |
| 577-696, gnl|mm7|chr16 (32926513-32925814) | |
| 577-696, gnl|oryCun1|scaffold_190991 (10240-9526) | |
| 577-696, gnl|panTro1|chr2 (128557716-128558586) | |
| 577-696, gnl|rheMac2|chr2 (45507826-45508683) | |
| 577-696, gnl|rn3|chr11 (69397475-69398204) | |
| 701-807, gnl|bosTau2|chr1 (37460585-37460693) | |
| 701-807, gnl|hg17|chr3 (126720829-126720987) | |
| 701-807, gnl|Hg17|chr3 (126720971-126720868) | |
| 701-807, gnl|mm7|chr16 (32926630-32926514) | |
| 701-807, gnl|monDom2|scaffold_1 (105692550-105692412) | |
| 701-807, gnl|oryCun1|scaffold_190991 (10393-10241) | |
| 701-807, gnl|panTro1|chr2 (128557557-128557715) | |
| 701-807, gnl|rheMac2|chr2 (45507667-45507825) | |
| 701-807, gnl|rn3|chr11 (69397322-69397474) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 4-576, gnl|bosTau2|chr5 (27052807-27052242) | |
| 4-576, gnl|Mm7|chr17 (20425998-20425434) | |
| 153-303, gnl|bosTau2|chr1 (37471309-37471457) | |
| 153-303, gnl|Hg17|chr3 (126706280-126706132) | |
| 153-303, gnl|Mm7|chr16 (32938781-32938919) | |
| 412-563, gnl|bosTau2|chr1 (37477326-37477477) | |
| 412-563, gnl|canFam2|chr33 (31501856-31502044) | |
| 412-563, gnl|danRer3|chr5 (67572452-67572649) | |
| 412-563, gnl|dasNov1|scaffold_64076 (8179-8366) | |
| 412-563, gnl|echTel1|scaffold_199148 (3936-3741) | |
| 412-563, gnl|fr1|chrUn (310824314-310824527) | |
| 412-563, gnl|galGal2|chr7 (28799594-28799769) | |
| 412-563, gnl|hg17|chr3 (126699366-126699554) | |
| 412-563, gnl|Hg17|chr3 (126699518-126699367) | |
| 412-563, gnl|mm7|chr16 (32942695-32942507) | |
| 412-563, gnl|Mm7|chr16 (32942541-32942692) | |
| 412-563, gnl|monDom2|scaffold_24 (24559182-24559369) | |
| 412-563, gnl|panTro1|chr2 (128535767-128535955) | |
| 412-563, gnl|rheMac2|chr2 (45484988-45485176) | |
| 412-563, gnl|rn3|chr11 (69373189-69373377) | |
| 412-563, gnl|tetNig1|chrUn_random (48559047-48559310) | |
| 577-696, gnl|bosTau2|chr1 (37460321-37460440) | |
| 577-696, gnl|hg17|chr3 (126720988-126721853) | |
| 577-696, gnl|Hg17|chr3 (126721099-126720975) | |
| 577-696, gnl|mm7|chr16 (32926513-32925814) | |
| 577-696, gnl|oryCun1|scaffold_190991 (10240-9526) | |
| 577-696, gnl|panTro1|chr2 (128557716-128558586) | |
| 577-696, gnl|rheMac2|chr2 (45507826-45508683) | |
| 577-696, gnl|rn3|chr11 (69397475-69398204) | |
| 701-807, gnl|bosTau2|chr1 (37460585-37460693) | |
| 701-807, gnl|hg17|chr3 (126720829-126720987) | |
| 701-807, gnl|Hg17|chr3 (126720971-126720868) | |
| 701-807, gnl|mm7|chr16 (32926630-32926514) | |
| 701-807, gnl|monDom2|scaffold_1 (105692550-105692412) | |
| 701-807, gnl|oryCun1|scaffold_190991 (10393-10241) | |
| 701-807, gnl|panTro1|chr2 (128557557-128557715) | |
| 701-807, gnl|rheMac2|chr2 (45507667-45507825) | |
| 701-807, gnl|rn3|chr11 (69397322-69397474) |
| Expressed library(ies): 2 entry(ies) | More info |
| Expressed library(ies): 2 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (0.183925) | |
| ebs (0.118301) |