Ss1.1-rnep26c_m7.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATGAATTTGTGGCTCTGAAGAAGGACGTGGACTGCGCCTACGTCCGCAAGTCAGACCTG GAGGCCAACGTGGAGGCCCTGGTCCAGGAGATCGACTTCCTGCGGCGACTGTATGAGGAG GAGATCCGCGTCCTCCAAGCCCACATCTCAGACACCTCGGTCATTGTCAAGTTGGACAAC AGCCGGGACCTGAACATGGATAACATCGTGGCGGAGATCAAGGCTCACTACGATGACATC GCCAGCCGCAGCCGGGCCGAGGCTGAGAGCTGGTACCGCAGCAAGTGTGAGGAGATCAAG GCCACGGTGGTCCGGCACGGGGAGACCCTGCGCCGCACCAAGGAGGAGATCAACGAGCTG AACCGCATGATCCAGAGGCTGACGGCCGAGATCGAGAATGCCAAGTGCCAGAACTCCAAG CTGGAGGCTGCCGTGGCTGAAGCTGAGCAGCAGGGCGAGGTGGCCCTCAACGATGCCAAG TGCAAGCTGGCGGAGCTGGAGGCCGCCCTGCAGAAGGCCAAGCAGGACATGGCCTGCCTG ATCAAGGAGTACCAGGAGGTGCTGAACTCCAAGCTGGGCCTGGACATCGAGATCGCCACC TACCGGCGCCTGCTGGAGGGCGAGGAGCAGAGGCTATGTGAAGGCATTGGAGCTGTGAAT GTCTGTGTCAGCAGCTCCCGGGGCGGGGTCGTGTGCGGGGACCTCTGCGTGTCTGGCTCC CGGCCCGTGACGGGCAGCGTCTGCAGCGCCCCCTGCAGCGGGAACGTGGCAGTGAGCACC GGCTTGTGTGCGCCCTGCGGCCAGCTCAACACCACCTGCGGAGGGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATGAATTTGTGGCTCTGAAGAAGGACGTGGACTGCGCCTACGTCCGCAAGTCAGACCTG GAGGCCAACGTGGAGGCCCTGGTCCAGGAGATCGACTTCCTGCGGCGACTGTATGAGGAG GAGATCCGCGTCCTCCAAGCCCACATCTCAGACACCTCGGTCATTGTCAAGTTGGACAAC AGCCGGGACCTGAACATGGATAACATCGTGGCGGAGATCAAGGCTCACTACGATGACATC GCCAGCCGCAGCCGGGCCGAGGCTGAGAGCTGGTACCGCAGCAAGTGTGAGGAGATCAAG GCCACGGTGGTCCGGCACGGGGAGACCCTGCGCCGCACCAAGGAGGAGATCAACGAGCTG AACCGCATGATCCAGAGGCTGACGGCCGAGATCGAGAATGCCAAGTGCCAGAACTCCAAG CTGGAGGCTGCCGTGGCTGAAGCTGAGCAGCAGGGCGAGGTGGCCCTCAACGATGCCAAG TGCAAGCTGGCGGAGCTGGAGGCCGCCCTGCAGAAGGCCAAGCAGGACATGGCCTGCCTG ATCAAGGAGTACCAGGAGGTGCTGAACTCCAAGCTGGGCCTGGACATCGAGATCGCCACC TACCGGCGCCTGCTGGAGGGCGAGGAGCAGAGGCTATGTGAAGGCATTGGAGCTGTGAAT GTCTGTGTCAGCAGCTCCCGGGGCGGGGTCGTGTGCGGGGACCTCTGCGTGTCTGGCTCC CGGCCCGTGACGGGCAGCGTCTGCAGCGCCCCCTGCAGCGGGAACGTGGCAGTGAGCACC GGCTTGTGTGCGCCCTGCGGCCAGCTCAACACCACCTGCGGAGGGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 410-568, - strand, RNAz p=0.916845 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 410-568, - strand, RNAz p=0.916845 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 98-305, gnl|bosTau2|chr5 (19756565-19756360) | |
| 98-305, gnl|Hg17|chr12 (50985276-50985473) | |
| 98-305, gnl|Mm7|chr15 (101462596-101462801) | |
| 408-636, gnl|bosTau2|chr5 (20227373-20227145) | |
| 408-636, gnl|canFam2|chr27 (5394317-5394084) | |
| 408-636, gnl|danRer3|chr23 (6313524-6313739) | |
| 408-636, gnl|dasNov1|scaffold_36707 (6370-6146) | |
| 408-636, gnl|echTel1|scaffold_323098 (84848-84619) | |
| 408-636, gnl|fr1|chrUn (81236700-81236912) | |
| 408-636, gnl|galGal2|chrUn (45201691-45201467) | |
| 408-636, gnl|hg17|chr12 (51395619-51395848) | |
| 408-636, gnl|Hg17|chr12 (51395852-51395624) | |
| 408-636, gnl|loxAfr1|scaffold_3302 (9090-9319) | |
| 408-636, gnl|mm7|chr15 (101873451-101873675) | |
| 408-636, gnl|Mm7|chr15 (101873679-101873451) | |
| 408-636, gnl|monDom2|scaffold_168 (484763-484982) | |
| 408-636, gnl|oryCun1|scaffold_205397 (41956-41722) | |
| 408-636, gnl|panTro1|chr10 (52623960-52624189) | |
| 408-636, gnl|rheMac2|chr11 (49786165-49786394) | |
| 408-636, gnl|rn3|chr7 (140661145-140661374) | |
| 408-636, gnl|tetNig1|chrUn_random (43167340-43167127) | |
| 408-636, gnl|xenTro1|scaffold_312 (1101672-1101896) | |
| 410-633, gnl|bosTau2|chr5 (19784723-19784500) | |
| 410-633, gnl|Hg17|chr12 (50947394-50947593) | |
| 486-627, gnl|bosTau2|chr19 (37398329-37398470) | |
| 486-627, gnl|Hg17|chr17 (40344276-40344135) | |
| 486-627, gnl|Mm7|chr11 (103002222-103002081) | |
| 665-827, gnl|bosTau2|chr5 (19783295-19783133) | |
| 665-827, gnl|Hg17|chr12 (50994869-50994707) | |
| 665-827, gnl|Mm7|chr15 (101471707-101471566) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 98-305, gnl|bosTau2|chr5 (19756565-19756360) | |
| 98-305, gnl|Hg17|chr12 (50985276-50985473) | |
| 98-305, gnl|Mm7|chr15 (101462596-101462801) | |
| 408-636, gnl|bosTau2|chr5 (20227373-20227145) | |
| 408-636, gnl|canFam2|chr27 (5394317-5394084) | |
| 408-636, gnl|danRer3|chr23 (6313524-6313739) | |
| 408-636, gnl|dasNov1|scaffold_36707 (6370-6146) | |
| 408-636, gnl|echTel1|scaffold_323098 (84848-84619) | |
| 408-636, gnl|fr1|chrUn (81236700-81236912) | |
| 408-636, gnl|galGal2|chrUn (45201691-45201467) | |
| 408-636, gnl|hg17|chr12 (51395619-51395848) | |
| 408-636, gnl|Hg17|chr12 (51395852-51395624) | |
| 408-636, gnl|loxAfr1|scaffold_3302 (9090-9319) | |
| 408-636, gnl|mm7|chr15 (101873451-101873675) | |
| 408-636, gnl|Mm7|chr15 (101873679-101873451) | |
| 408-636, gnl|monDom2|scaffold_168 (484763-484982) | |
| 408-636, gnl|oryCun1|scaffold_205397 (41956-41722) | |
| 408-636, gnl|panTro1|chr10 (52623960-52624189) | |
| 408-636, gnl|rheMac2|chr11 (49786165-49786394) | |
| 408-636, gnl|rn3|chr7 (140661145-140661374) | |
| 408-636, gnl|tetNig1|chrUn_random (43167340-43167127) | |
| 408-636, gnl|xenTro1|scaffold_312 (1101672-1101896) | |
| 410-633, gnl|bosTau2|chr5 (19784723-19784500) | |
| 410-633, gnl|Hg17|chr12 (50947394-50947593) | |
| 486-627, gnl|bosTau2|chr19 (37398329-37398470) | |
| 486-627, gnl|Hg17|chr17 (40344276-40344135) | |
| 486-627, gnl|Mm7|chr11 (103002222-103002081) | |
| 665-827, gnl|bosTau2|chr5 (19783295-19783133) | |
| 665-827, gnl|Hg17|chr12 (50994869-50994707) | |
| 665-827, gnl|Mm7|chr15 (101471707-101471566) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nep (1.65532) |