Non-Coding RNA Search

Ss1.1-rnep27c_c11.5

Sequence:


               
               CCCAGAGTCAGAAGACAGCTGGAGGACCAGGGACAGTCAGGTGGAAACGGTCAGGCCAAA
ATGGGCAGAGAAGAGACACAGGGGGAGAGACAGTCGGGAAGGAGGCGGCCAGAGACAGGC
CAGAAACAACCAGAGGGGCCGAGACAGTCAGAAGAGAGACAGCTCGAGACAGAGACAGCC
AGAGACGGGCTGCCTCCAAGTTTCCAGAAGCGGTGTTTCCAATTCAGTGGCATGGCTTTG
AGGGCCAACGAACGTGACCTAGGCCAAGGTTGCAGAAGCTCTCACACTCACGCGCACACA
TTTTTACCCATATATAATATATTTATTTATACATAATAGATATAAGTGCCTTTCGGAAAC
CAGGAAAGGGATAAATAGCCGCGGGAGGCGGGGGTCCGGGTTCAGGGCGGGAGCCGCGCA
GGACGGGTCAGTGGAATGTTTTCCATGCAGCACGGAGGGCGGCGGGACCCACCCGATATT
AAAAAATATCCATTAGCCTCGTGAGAAAATTCTCCGAGGTGAAGCACAGGGAAAGGGGGG
GGAGGGGAGGGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCCAGAGTCAGAAGACAGCTGGAGGACCAGGGACAGTCAGGTGGAAACGGTCAGGCCAAA
ATGGGCAGAGAAGAGACACAGGGGGAGAGACAGTCGGGAAGGAGGCGGCCAGAGACAGGC
CAGAAACAACCAGAGGGGCCGAGACAGTCAGAAGAGAGACAGCTCGAGACAGAGACAGCC
AGAGACGGGCTGCCTCCAAGTTTCCAGAAGCGGTGTTTCCAATTCAGTGGCATGGCTTTG
AGGGCCAACGAACGTGACCTAGGCCAAGGTTGCAGAAGCTCTCACACTCACGCGCACACA
TTTTTACCCATATATAATATATTTATTTATACATAATAGATATAAGTGCCTTTCGGAAAC
CAGGAAAGGGATAAATAGCCGCGGGAGGCGGGGGTCCGGGTTCAGGGCGGGAGCCGCGCA
GGACGGGTCAGTGGAATGTTTTCCATGCAGCACGGAGGGCGGCGGGACCCACCCGATATT
AAAAAATATCCATTAGCCTCGTGAGAAAATTCTCCGAGGTGAAGCACAGGGAAAGGGGGG
GGAGGGGAGGGA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               237-350, - strand, RNAz p=0.869996
               

               
               420-536, - strand, RNAz p=0.999868

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               237-350, - strand, RNAz p=0.869996
               

               
               420-536, - strand, RNAz p=0.999868

Homologous human UTR: 2 entry(ies)

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Homologous human UTR: 2 entry(ies)

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               3' of NM_006732, -
               

               
               3' of NM_006732, -

Homologous human UTR: 2 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006732, -
               

               
               3' of NM_006732, -

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-536, gnl|bosTau2|chr18 (38420436-38420966)
               

               
               1-536, gnl|canFam2|chr1 (112978619-112978195)
               

               
               1-536, gnl|dasNov1|scaffold_22471 (4393-3996)
               

               
               1-536, gnl|hg17|chr19 (50669405-50669824)
               

               
               1-536, gnl|Hg17|chr19 (50669990-50669476)
               

               
               1-536, gnl|loxAfr1|scaffold_14841 (26474-26008)
               

               
               1-536, gnl|mm7|chr7 (16985947-16985549)
               

               
               1-536, gnl|Mm7|chr7 (16985371-16985881)
               

               
               1-536, gnl|monDom2|scaffold_205 (808258-807840)
               

               
               1-536, gnl|panTro1|chr20 (47854592-47855011)
               

               
               1-536, gnl|rheMac2|chr19 (51913980-51914398)
               

               
               1-536, gnl|rn3|chr1 (78745393-78745009)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-536, gnl|bosTau2|chr18 (38420436-38420966)
               

               
               1-536, gnl|canFam2|chr1 (112978619-112978195)
               

               
               1-536, gnl|dasNov1|scaffold_22471 (4393-3996)
               

               
               1-536, gnl|hg17|chr19 (50669405-50669824)
               

               
               1-536, gnl|Hg17|chr19 (50669990-50669476)
               

               
               1-536, gnl|loxAfr1|scaffold_14841 (26474-26008)
               

               
               1-536, gnl|mm7|chr7 (16985947-16985549)
               

               
               1-536, gnl|Mm7|chr7 (16985371-16985881)
               

               
               1-536, gnl|monDom2|scaffold_205 (808258-807840)
               

               
               1-536, gnl|panTro1|chr20 (47854592-47855011)
               

               
               1-536, gnl|rheMac2|chr19 (51913980-51914398)
               

               
               1-536, gnl|rn3|chr1 (78745393-78745009)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               nep (0.183925)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nep (0.183925)

	237-350, - strand, RNAz p=0.869996
	420-536, - strand, RNAz p=0.999868

	1-536, gnl\|bosTau2\|chr18 (38420436-38420966)
	1-536, gnl\|canFam2\|chr1 (112978619-112978195)
	1-536, gnl\|dasNov1\|scaffold_22471 (4393-3996)
	1-536, gnl\|hg17\|chr19 (50669405-50669824)
	1-536, gnl\|Hg17\|chr19 (50669990-50669476)
	1-536, gnl\|loxAfr1\|scaffold_14841 (26474-26008)
	1-536, gnl\|mm7\|chr7 (16985947-16985549)
	1-536, gnl\|Mm7\|chr7 (16985371-16985881)
	1-536, gnl\|monDom2\|scaffold_205 (808258-807840)
	1-536, gnl\|panTro1\|chr20 (47854592-47855011)
	1-536, gnl\|rheMac2\|chr19 (51913980-51914398)
	1-536, gnl\|rn3\|chr1 (78745393-78745009)